Evidence map›Paper›PMID 23049850›Full record

ArticlePloS one2012

Protein stability and dynamics modulation: the case of human frataxin.

Ernesto A Roman, Santiago E Faraj, Mariana Gallo, Andres G Salvay, Diego U Ferreiro, Javier Santos

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Effects of FeInternational journal of molecular sciences · 2020
    Article
  9. Article
  10. Article
  11. Frustration, function and folding.Current opinion in structural biology · 2018
    Review
  12. Article
  13. Structural characterization of metal binding to a cold-adapted frataxin.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Ernesto A RomanInstituto de Química y Físico-Química Biológicas, Universidad de Buenos Aires, Buenos Aires, Argentina.
Santiago E Faraj
Mariana Gallo
Andres G Salvay
Diego U Ferreiro
Javier Santos
University of Buenos Aires · ARConsejo Nacional de Investigaciones Científicas y Técnicas · ARInstituto de Fisica de Liquidos y Sistemas Biologicos · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Frataxin (FXN) is an α/β protein that plays an essential role in iron homeostasis. Apparently, the function of human FXN (hFXN) depends on the cooperative formation of crucial interactions between helix α1, helix α2, and the C-terminal region (CTR) of the protein. In this work we quantitatively explore these relationships using a purified recombinant fragment hFXN90-195. This variant shows the hydrodynamic behavior expected for a monomeric globular domain. Circular dichroism, fluorescence, and NMR spectroscopies show that hFXN90-195 presents native-like secondary and tertiary structure. However, chemical and temperature induced denaturation show that CTR truncation significantly destabilizes the overall hFXN fold. Accordingly, limited proteolysis experiments suggest that the native-state dynamics of hFXN90-195 and hFXN90-210 are indeed different, being the former form much more sensitive to the protease at specific sites. The overall folding dynamics of hFXN fold was further explored with structure-based protein folding simulations. These suggest that the native ensemble of hFXN can be decomposed in at least two substates, one with consolidation of the CTR and the other without consolidation of the CTR. Explicit-solvent all atom simulations identify some of the proteolytic target sites as flexible regions of the protein. We propose that the local unfolding of CTR may be a critical step for the global unfolding of hFXN, and that modulation of the CTR interactions may strongly affect hFXN physiological function.

Indexed as

Circular DichroismFrataxinHomeostasisHumansHydrodynamicsIronIron-Binding ProteinsMagnetic Resonance SpectroscopyMicroscopy, FluorescenceModels, MolecularMolecular ConformationMolecular Dynamics SimulationPoint MutationProtein DenaturationProtein FoldingProtein Structure, TertiaryFrataxinIronIron-Binding ProteinsRecombinant ProteinsSolvents

Identifiers

PMID23049850
PMCPMC3458073
OpenAlexW2045880076

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.