Evidence map›Paper›PMID 23047626›Full record

ArticleInternational journal of cancer2013

Epstein-Barr virus-induced epigenetic alterations following transient infection.

Krista J Queen, Mingxia Shi, Fangfang Zhang, Urska Cvek, Rona S Scott

Open access · bronzeAbstract read
In one paragraph

Article in International journal of cancer, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. The Oncogenic Role ofInternational journal of molecular sciences · 2024
    Article
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  16. Article
  17. Review
  18. Article
  19. Epstein-Barr virus infection and nasopharyngeal carcinoma.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  20. Epstein-Barr virus-associated lymphomas.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Krista J QueenCenter for Molecular and Tumor Virology, Louisiana State University Health Sciences Center, Shreveport, LA 71130, USA.
Mingxia Shi
Fangfang Zhang
Urska Cvek
Rona S Scott
Louisiana State University Health Sciences Center Shreveport · USIn-Q-Tel · USLouisiana State University in Shreveport · US

Funding

COBRE Center for Molecular and Tumor VirologyP20GM103433 · NIGMS · LOUISIANA STATE UNIV HSC SHREVEPORT · PI O'CALLAGHAN, DENNIS JOHN · 2012 to 2012
$1.9M
Epstein-Barr Virus-Enhanced Tumor ProgressionR01CA114416 · NCI · LOUISIANA STATE UNIV HSC SHREVEPORT · PI SCOTT, RONA S · 2006 to 2010
$1.4M
NCI NIH HHS CA114416NCI NIH HHS R01 CA114416NIGMS NIH HHS GM103433NIGMS NIH HHS P20 GM103433
6 · The paper itself

Abstract

Epstein-Barr virus (EBV) is a known tumor virus associated with an increasing array of malignancies; however, the association of the virus with certain malignancies is often erratic. To determine EBV's contributions to tumorigenesis in a setting of incomplete association, a transient model of infection was established where a clonal CCL185 carcinoma cell line infected with recombinant EBV was allowed to lose viral genomes by withdrawal of selection pressure. Global gene expression comparing EBV-negative, transiently infected clones to uninfected controls identified expression changes in more than 1,000 genes. Among downregulated genes, several genes known to be deoxyribonucleic acid (DNA) methylated in cancer were identified including E-cadherin and PYCARD. A cadherin switch, increased motility and enhanced cellular invasiveness present in EBV-positive cells were retained after viral loss, indicating an epigenetic effect. Repression of PYCARD expression was a result of increased promoter CpG methylation, whereas loss of E-cadherin expression after transient EBV infection did not correlate with increased DNA methylation of the E-cadherin promoter. Rather, repression of E-cadherin was consistent with the formation of a repressive chromatin state. Decreased histone 3 or 4 acetylation at the promoter and 5' end of the E-cadherin gene was observed in an EBV-negative, transiently infected clone relative to the uninfected controls. These results suggest that EBV can stably alter gene expression in a heritable fashion in formerly infected cells, whereas its own contribution to the oncogenic process is masked.

Indexed as

DNA MethylationEpigenomicsBiomarkers, TumorBlotting, WesternCadherinsCARD Signaling Adaptor ProteinsCell AdhesionCell MovementCell ProliferationChromatinChromatin ImmunoprecipitationCpG IslandsCytoskeletal ProteinsEpstein-Barr Virus InfectionsGene Expression ProfilingHerpesvirus 4, HumanBiomarkers, TumorCadherinsCARD Signaling Adaptor ProteinsChromatinCytoskeletal ProteinsHistonesPYCARD protein, humanRNA, Messenger

Identifiers

PMID23047626
PMCPMC3578144
OpenAlexW2040854036

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.