Evidence map›Paper›PMID 23047157›Full record

ReviewBriefings in bioinformatics2014

Data management strategies for multinational large-scale systems biology projects.

Wasco Wruck, Martin Peuker, Christian R A Regenbrecht

Abstract readComparative StudyReview
In one paragraph

Review in Briefings in bioinformatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Systems Biology to Support Nanomaterial Grouping.Advances in experimental medicine and biology · 2017
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Sharing big biomedical data.Journal of big data
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Wasco WruckInstitute of Pathology, Charite - Universitaetsmedizin Berlin, Chariteplatz 1, 10117 Berlin. Tel.: +49 30 2093 8951; Fax: +49 30 450 536 909; wasco.wruck@charite.de.
Martin Peuker
Christian R A Regenbrecht

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Good accessibility of publicly funded research data is essential to secure an open scientific system and eventually becomes mandatory [Wellcome Trust will Penalise Scientists Who Don't Embrace Open Access. The Guardian 2012]. By the use of high-throughput methods in many research areas from physics to systems biology, large data collections are increasingly important as raw material for research. Here, we present strategies worked out by international and national institutions targeting open access to publicly funded research data via incentives or obligations to share data. Funding organizations such as the British Wellcome Trust therefore have developed data sharing policies and request commitment to data management and sharing in grant applications. Increased citation rates are a profound argument for sharing publication data. Pre-publication sharing might be rewarded by a data citation credit system via digital object identifiers (DOIs) which have initially been in use for data objects. Besides policies and incentives, good practice in data management is indispensable. However, appropriate systems for data management of large-scale projects for example in systems biology are hard to find. Here, we give an overview of a selection of open-source data management systems proved to be employed successfully in large-scale projects.

Indexed as

Database Management SystemsAccess to InformationComputational BiologyData CollectionInformation DisseminationInternationalitySoftwareSystems Biologydata citationdata managementdata sharingopen accesssystems biology

Identifiers

PMID23047157
PMCPMC3896927

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.