Evidence map›Paper›PMID 23046996›Full record

ArticleJournal of immunological methods2012

Autofluorescence contributes to false-positive intracellular Foxp3 staining in macrophages: a lesson learned from flow cytometry.

Fuqiang Li, Mingjie Yang, Lai Wang, Ian Williamson, Fang Tian, Minghui Qin, Prediman K Shah, Behrooz G Sharifi

Abstract read
In one paragraph

Article in Journal of immunological methods, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 67 citations in OpenAlex.

  1. Exhausted CD4Frontiers in immunology · 2026
    Article
  2. Lymphotoxin beta receptorInfection and immunity · 2025
    Article
  3. Anti-Antimicrobial agents and chemotherapy · 2024
    Article
  4. Article
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  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Multiplex Immunofluorescence of Bone Marrow Core Biopsies: Visualizing the Bone Marrow Immune Contexture.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2020
    Article
  17. Review
  18. Article
  19. Fluorescence lifetime shifts of NAD(P)H during apoptosis measured by time-resolved flow cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Fuqiang LiOppenheimer Atherosclerosis Research Center and the Division of Cardiology, Cedars Sinai Heart Institute, Los Angeles, 90048, USA.
Mingjie Yang
Lai Wang
Ian Williamson
Fang Tian
Minghui Qin
Prediman K Shah
Behrooz G Sharifi
Cedars-Sinai Medical Center · US

Funding

PTN FUNCTION IN INTIMAL THICKENINGR01HL104068 · NHLBI · CEDARS-SINAI MEDICAL CENTER · PI SHAH, PREDIMAN KRISHAN · 2011 to 2014
$1.6M
Directed Vascular Graft Regeneration in the Mouse Peritoneal CavityR01HL090653 · NHLBI · CEDARS-SINAI MEDICAL CENTER · PI SHAH, PREDIMAN KRISHAN, SHARIFI, BEHROOZ G · 2008 to 2011
$1.6M
REGULATION OF TENASCIN SYNTHESIS BY CHEMOTACTIC FACTORSR29HL050566 · NHLBI · CEDARS-SINAI MEDICAL CENTER · PI SHARIFI, BEHROOZ G · 1995 to 1998
–
NHLBI NIH HHS R01 HL090653NHLBI NIH HHS R01 HL104068NHLBI NIH HHS R29 HL050566
6 · The paper itself

Abstract

Forkhead box P3 (Foxp3) is well known for its highly restricted expression in T regulatory cells (Tregs). A recent study suggested the existence of a Foxp3 positive macrophage subpopulation in mouse bone marrow, spleen, liver, lymph nodes, and thymus that exhibited immune regulatory effect similar to Tregs. Before this report was retracted, we attempted to study the function of this macrophage subpopulation in a mouse model of hyperlipidemia. Bone marrow and spleen cells isolated from C57BL/6 apo E(-/-) mice were stained with anti-CD11b, anti-F4/80 and anti-Foxp3 and analyzed by flow cytometry. Our results showed that 3.06-8.08% of CD11b(+)F4/80(+) macrophages from bone marrow cells and 0.24-2.21% from splenic were Foxp3-positive. Unexpectedly, unstained or isotype stained controls also showed strong autofluorescence and similar percentages of these cells fell within the same FL1 channel that counted the anti-Foxp3 stained population. Back gating of the autofluorescent population onto a SSC/FSC plot showed that this population of cells had a higher side scatter. The peritoneal macrophages (PMø) exhibited similar autofluorescence. We used qPCR to further evaluate the expression of Foxp3 mRNA in PMø that were treated with M-CSF, M-CSF+IL-4, M-CSF+TGFβ1 or in BMDM treated with TGFβ1 in the presence of anti-CD3 and CD28 antibody co-stimulators. No expression of Foxp3 mRNA was detected in either cell culture systems, whereas robust Foxp3 gene expression was induced in naïve CD4+ cells stimulated with TGFβ1. Consistent with these findings, fluorescence microscopy showed no Foxp3 protein expression in PMø, however Foxp3 expression was easily detected in induced Tregs. We conclude that the reported expression of Foxp3 in macrophages is likely an artifact and that a stringent multimodality approach is critical to demonstrate candidate gene expression in any cell type.

Indexed as

AnimalsCells, CulturedCell SeparationDisease Models, AnimalFalse Positive ReactionsFlow CytometryForkhead Transcription FactorsHumansHyperlipidemiasMacrophagesMiceMice, Inbred C57BLMice, KnockoutOptical ImagingRNA, MessengerForkhead Transcription FactorsFoxp3 protein, mouseRNA, Messenger

Identifiers

PMID23046996
PMCPMC3472136
OpenAlexW1968395152

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.