ArticleBioinformatics (Oxford, England)2012
fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays.
Article in Bioinformatics (Oxford, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 2 of them syntheses that pooled it.
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Who cites it
30 citing papers in PubMed, 2 syntheses or guidelines pooled it.
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- Transcriptomic Harmonization as the Way for Suppressing Cross-Platform Bias and Batch Effect.Biomedicines · 2022Review
- ELIMINATOR: essentiality analysis using multisystem networks and integer programming.BMC bioinformatics · 2022Article
- HER2-low breast cancer shows a lower immune response compared to HER2-negative cases.Scientific reports · 2022Article
- Clinical Study of Aspirin and Zileuton on Biomarkers of Tobacco-Related Carcinogenesis in Current Smokers.Cancers · 2022Article
- Decision Theory versus Conventional Statistics for Personalized Therapy of Breast Cancer.Journal of personalized medicine · 2022Article
- Gene expression barcode values reveal a potential link between Parkinson's disease and gastric cancer.Aging · 2021Article
- Gene expression analysis reveals a pitfall in the molecular research of prostate tumors relevant to Gleason score.Journal of bioinformatics and computational biology · 2020Article
- Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships.Nature communications · 2020Article
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- High stromal nicotinamide N-methyltransferase (NNMT) indicates poor prognosis in colorectal cancer.Cancer medicine · 2020Article
- Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization.International journal of molecular sciences · 2019Article
- Transcription profile of the insulin-like growth factor signaling pathway during human ovarian follicular development.Journal of assisted reproduction and genetics · 2019Article
- A Gene Expression Signature Predicts Bladder Cancer Cell Line Sensitivity to EGFR Inhibition.Bladder cancer (Amsterdam, Netherlands) · 2018Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
summaryFrozen robust multiarray analysis (fRMA) is a single-array preprocessing algorithm that retains the advantages of multiarray algorithms and removes certain batch effects by downweighting probes that have high between-batch residual variance. Here, we extend the fRMA algorithm to two new microarray platforms--Affymetrix Human Exon and Gene 1.0 ST--by modifying the fRMA probe-level model and extending the frma package to work with oligo ExonFeatureSet and GeneFeatureSet objects. AVAILABILITY AND IMPLEMENTATION: All packages are implemented in R. Source code and binaries are freely available through the Bioconductor project. Convenient links to all software and data packages can be found at http://mnmccall.com/software CONTACT: mccallm@gmail.com.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.