Evidence map›Paper›PMID 23043664›Full record

ArticleHPB : the official journal of the International Hepato Pancreato Biliary Association2012

Molecular analysis of Helicobacter pylori virulent-associated genes in hepatobiliary patients.

Wongwarut Boonyanugomol, Chariya Chomvarin, Banchob Sripa, Siri Chau-In, Ake Pugkhem, Wises Namwat, Warawan Wongboot, Bandit Khampoosa

Open access · bronzeAbstract read
In one paragraph

Article in HPB : the official journal of the International Hepato Pancreato Biliary Association, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 24 citations in OpenAlex.

  1. World journal of gastroenterology · 2024
    Pooled it
  2. Pooled it
  3. The immunopathogenesis ofFrontiers in microbiology · 2024
    Review
  4. Article
  5. Infection withPathogens (Basel, Switzerland) · 2020
    Article
  6. Review
  7. World journal of gastroenterology · 2017
    Review
  8. Article
  9. Article
  10. Article
  11. Virulence Factors of Helicobacter pylori: A Review.Clinical medicine insights. Gastroenterology · 2014
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Wongwarut BoonyanugomolDepartment of Microbiology, Khon Kaen University, Khon Kaen, Thailand.
Chariya Chomvarin
Banchob Sripa
Siri Chau-In
Ake Pugkhem
Wises Namwat
Warawan Wongboot
Bandit Khampoosa
Khon Kaen University · THKing Mongkut's University of Technology Thonburi · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesThe Helicobacter pylori virulence-associated genes in hepatobiliary patients, including vacA, iceA, babA2, cagA and cagE, have not been reported. The aim of this study was to investigate these genes and the association of those and the clinical outcomes in hepatobiliary diseases.

methodsEighty H. pylori-PCR-positive cases were obtained from hepatobiliary patients, representing both cholangiocarcinoma (CCA) (n= 58) and cholelithiasis (n= 22). The diversity of virulence genes was examined by polymerase chain reaction and DNA sequencing. Phylogenetic analysis of cagA was determined using the maximum parsimony method.

resultsThe vacAs1a + c/m1, iceA1 and babA2 genes were the most predominant genotypes in both CCA and cholelithiasis patients. The cagA and cagE genes were found significantly more frequently in patients with CCA than those with cholelithiasis (P < 0.05). The cagA positive samples were the Western-type cagA and showed that almost all of the detected sequences in Thai hepatobiliary and Thai gastric cancer patients were classified in the same cluster but separated from the cluster of Japan and other countries.

conclusionsThe cagA and cagE genes may be associated in the pathogenesis of hepatobiliary diseases, especially of CCA. Besides the bacterial variation, other host factors may be involved in the pathogenesis of hepatobiliary cancer.

Indexed as

Bile Ducts, IntrahepaticAdultAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsBase SequenceBile Duct NeoplasmsCase-Control StudiesChi-Square DistributionCholangiocarcinomaCholelithiasisFemaleGenotypeHelicobacter InfectionsHelicobacter pyloriHumansAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinscagA protein, Helicobacter pyloriice nucleation proteinPicB protein, Helicobacter pyloriVacA protein, Helicobacter pyloriVirulence Factors

Identifiers

PMID23043664
PMCPMC3482671
OpenAlexW2002762908

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.