Evidence map›Paper›PMID 23043138›Full record

ArticleThe Journal of biological chemistry2013

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.

Paul C Blainey, Vito Graziano, Ana J Pérez-Berná, William J McGrath, S Jane Flint, Carmen San Martín, X Sunney Xie, Walter F Mangel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Dynamic competition for hexon binding between core protein VII and lytic protein VI promotes adenovirus maturation and entry.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Simultaneous Single-CellJournal of virology · 2017
    Article
  11. Article
  12. Review
  13. Sliding on DNA: From Peptides to Small Molecules.Angewandte Chemie (International ed. in English) · 2016
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Paul C BlaineyDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Vito Graziano
Ana J Pérez-Berná
William J McGrath
S Jane Flint
Carmen San Martín
X Sunney Xie
Walter F Mangel
Brookhaven National Laboratory · USCentro Nacional de Biotecnología · ESHarvard University · USPrinceton University · US

Funding

REGULATION OF ADENOVIRUS PROTEINASE BY A PEPTIDE AND DNAR01AI041599 · NIAID · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MANGEL, WALTER F. · 1997 to 2011
$7.4M
NIH Director's Pioneer Award (RMI)DP1OD000277 · OD · HARVARD UNIVERSITY · PI XIE, XIAOLIANG SUNNEY · 2004 to 2008
$4.0M
TRANSCRIPTIONAL REGULATION OF ADENOVIRUS LATE GENESR01GM037705 · NIGMS · PRINCETON UNIVERSITY · PI FLINT, SARAH JANE · 1987 to 2007
$1.6M
Maturation of adenovirus via a new type of biochemistryR21AI113565 · NIAID · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MANGEL, WALTER F. · 2014 to 2015
$623k
NIAID NIH HHS R01 AI041599NIAID NIH HHS R01AI41599NIAID NIH HHS R21 AI113565NIGMS NIH HHS GM037705NIGMS NIH HHS R01 GM037705NIH HHS DP1 OD000277
6 · The paper itself

Abstract

Precursor proteins used in the assembly of adenovirus virions must be processed by the virally encoded adenovirus proteinase (AVP) before the virus particle becomes infectious. An activated adenovirus proteinase, the AVP-pVIc complex, was shown to slide along viral DNA with an extremely fast one-dimensional diffusion constant, 21.0 ± 1.9 × 10(6) bp(2)/s. In principle, one-dimensional diffusion can provide a means for DNA-bound proteinases to locate and process DNA-bound substrates. Here, we show that this is correct. In vitro, AVP-pVIc complexes processed a purified virion precursor protein in a DNA-dependent reaction; in a quasi in vivo environment, heat-disrupted ts-1 virions, AVP-pVIc complexes processed five different precursor proteins in DNA-dependent reactions. Sliding of AVP-pVIc complexes along DNA illustrates a new biochemical mechanism by which a proteinase can locate its substrates, represents a new paradigm for virion maturation, and reveals a new way of exploiting the surface of DNA.

Indexed as

Adenoviruses, HumanAmino Acid SequenceCapsid ProteinsCysteine EndopeptidasesDNA, ViralEnzyme ActivationEscherichia coliHot TemperatureHumansKineticsModels, MolecularMolecular Sequence DataProtein BindingProtein PrecursorsProtein Structure, SecondaryProtein Structure, TertiaryadenainCapsid ProteinsCysteine EndopeptidasesDNA, Viralpolypeptide VI, adenovirusProtein PrecursorsRecombinant Proteins

Identifiers

PMID23043138
PMCPMC3548515
OpenAlexW2100061459

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.