Evidence map›Paper›PMID 23043111›Full record

ReviewThe Journal of biological chemistry2012

The choreography of HIV-1 proteolytic processing and virion assembly.

Sook-Kyung Lee, Marc Potempa, Ronald Swanstrom

Open access · hybridAbstract readReview
In one paragraph

Review in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 134 citations in OpenAlex.

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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sook-Kyung LeeDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.
Marc Potempa
Ronald Swanstrom
University of North Carolina at Chapel Hill · US

Funding

Targeting ensembles of Drug Resistant HIV ProteasesP01GM066524 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RANA, TARIQ M · 2002 to 2011
$16.3M
Biological properties of HIV-1 V3 evolutionary variantsR37AI044667 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SWANSTROM, RONALD I · 2005 to 2014
$3.4M
BIOLOGICAL PROPERTIES OF HIV1 V3 EVOLUTIONARY VARIANTSR01AI044667 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI SWANSTROM, RONALD I · 1999 to 2002
$800k
High Throughput Screen For HIV-1 MA/CA Processing Site InhibitorsR21NS073052 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JANZEN, WILLIAM PERRY, SWANSTROM, RONALD I · 2011 to 2011
$148k
NIAID NIH HHS R01 AI044667NIAID NIH HHS R37 AI044667NIAID NIH HHS R37 AI44667NIGMS NIH HHS P01 GM066524NINDS NIH HHS R21 NS073052
6 · The paper itself

Abstract

HIV-1 has been the target of intensive research at the molecular and biochemical levels for >25 years. Collectively, this work has led to a detailed understanding of viral replication and the development of 24 approved drugs that have five different targets on various viral proteins and one cellular target (CCR5). Although most drugs target viral enzymatic activities, our detailed knowledge of so much of the viral life cycle is leading us into other types of inhibitors that can block or disrupt protein-protein interactions. Viruses have compact genomes and employ a strategy of using a small number of proteins that can form repeating structures to enclose space (i.e. condensing the viral genome inside of a protein shell), thus minimizing the need for a large protein coding capacity. This creates a relatively small number of critical protein-protein interactions that are essential for viral replication. For HIV-1, the Gag protein has the role of a polyprotein precursor that contains all of the structural proteins of the virion: matrix, capsid, spacer peptide 1, nucleocapsid, spacer peptide 2, and p6 (which contains protein-binding domains that interact with host proteins during budding). Similarly, the Gag-Pro-Pol precursor encodes most of the Gag protein but now includes the viral enzymes: protease, reverse transcriptase (with its associated RNase H activity), and integrase. Gag and Gag-Pro-Pol are the substrates of the viral protease, which is responsible for cleaving these precursors into their mature and fully active forms (see Fig. 1A).

Indexed as

Catalytic DomainDrug ResistanceGene Expression Regulation, ViralGene Products, gagGenome, ViralHIV-1HumansModels, GeneticMolecular ConformationMutationProtease InhibitorsProtein Interaction MappingProteolysisReceptors, CCR5VirionVirus AssemblyGene Products, gagProtease InhibitorsReceptors, CCR5

Identifiers

PMID23043111
PMCPMC3510790
OpenAlexW1977218442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.