Evidence map›Paper›PMID 23042990›Full record

ArticleJournal of bacteriology2012

Polymorphisms in inc proteins and differential expression of inc genes among Chlamydia trachomatis strains correlate with invasiveness and tropism of lymphogranuloma venereum isolates.

Filipe Almeida, Vítor Borges, Rita Ferreira, Maria José Borrego, João Paulo Gomes, Luís Jaime Mota

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.1field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Journal of bacteriology · 2025
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  3. Genes · 2025
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  7. ThemBio · 2023
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  8. Microorganisms · 2023
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  9. Article
  10. Genome organization and genomics inFrontiers in cellular and infection microbiology · 2023
    Review
  11. Lymphogranuloma venereum: an emerging problem in Poland.Postepy dermatologii i alergologii · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. The multiple functions of the numerousMicrobial cell (Graz, Austria) · 2019
    Review
  16. Article
  17. Chlamydial Infection From Outside to Inside.Frontiers in microbiology · 2019
    Review
  18. The Human Centrosomal Protein CCDC146 BindsFrontiers in cellular and infection microbiology · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Filipe AlmeidaInfection Biology Laboratory, Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Oeiras, Portugal.
Vítor Borges
Rita Ferreira
Maria José Borrego
João Paulo Gomes
Luís Jaime Mota
National Institute of Health Dr. Ricardo Jorge · PTUniversidade Nova de Lisboa · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chlamydia trachomatis is a human bacterial pathogen that multiplies only within an intracellular membrane-bound vacuole, the inclusion. C. trachomatis includes ocular and urogenital strains, usually causing infections restricted to epithelial cells of the conjunctiva and genital mucosa, respectively, and lymphogranuloma venereum (LGV) strains, which can infect macrophages and spread into lymph nodes. However, C. trachomatis genomes display >98% identity at the DNA level. In this work, we studied whether C. trachomatis Inc proteins, which have a bilobed hydrophobic domain that may mediate their insertion in the inclusion membrane, could be a factor determining these different types of infection and tropisms. Analyses of polymorphisms and phylogeny of 48 Inc proteins from 51 strains encompassing the three disease groups showed significant amino acid differences that were mainly due to variations between Inc proteins from LGV and ocular or urogenital isolates. Studies of the evolutionary dynamics of inc genes suggested that 10 of them are likely under positive selection and indicated that most nonsilent mutations are LGV specific. Additionally, real-time quantitative PCR analyses in prototype and clinical strains covering the three disease groups identified three inc genes with LGV-specific expression. We determined the transcriptional start sites of these genes and found LGV-specific nucleotides within their promoters. Thus, subtle variations in the amino acids of a subset of Inc proteins and in the expression of inc genes may contribute to the unique tropism and invasiveness of C. trachomatis LGV strains.

Indexed as

Polymorphism, GeneticChlamydia trachomatisDNA, BacterialEvolution, MolecularHumansLymphogranuloma VenereumMolecular Sequence DataPhylogenySequence Analysis, DNATranscription, GeneticTranscription Initiation SiteTropismVirulence FactorsDNA, BacterialVirulence Factors

Identifiers

PMID23042990
PMCPMC3497493
OpenAlexW1992724777

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.