Evidence map›Paper›PMID 23041190›Full record

ArticleBiochemical and biophysical research communications2012

Oligomerization of the transmembrane domain of IRE1α in SDS micelles.

Hyunju Cho, Ryan Lamarca, Christina Chan

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hyunju ChoDepartment of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824, United States.
Ryan Lamarca
Christina Chan

Funding

Bioengineered Scaffolds for Spinal Cord InjuryR01EB014986 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAKAMOTO, JEFFREY, TUSZYNSKI, MARK H. · 2012 to 2016
$2.4M
Develop a Dynamic Model that Incoporates Text-mining to Reconstruct NetworksR01GM079688 · NIGMS · MICHIGAN STATE UNIVERSITY · PI CHAN, CHRISTINA · 2007 to 2012
$1.2M
Maximizing siRNA Function through Mechanism-based Sequence and Vehicle DesignR01GM089866 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WALTON, STEPHEN PATRICK · 2010 to 2013
$922k
Development of a parallel, array-based transcription factor expression assayR21RR024439 · NCRR · MICHIGAN STATE UNIVERSITY · PI WALTON, STEPHEN PATRICK · 2008 to 2010
$540k
NCRR NIH HHS R21 RR024439NIBIB NIH HHS R01 EB014986NIBIB NIH HHS R01EB014986NIGMS NIH HHS 1R01GM089866NIGMS NIH HHS R01 GM079688NIGMS NIH HHS R01GM079688NIGMS NIH HHS R01 GM089866
6 · The paper itself

Abstract

IRE1α (Inositol-requiring enzyme 1 α), an endoplasmic reticulum (ER)-resident sensor for mammalian unfolded protein response, is a type I transmembrane protein which has a bifunctional enzyme containing kinase and RNase domains. Although the luminal domain and cytosolic domain of IRE1α are thought to play crucial roles in regulating the protein activity, no functional and structural studies of the transmembrane domain exist thus far. Herein, using CD spectroscopy, we report that the transmembrane domain of the IRE1α is alpha-helical in a membrane-like environment. In addition, SDS-PAGE and FRET analyses support that the transmembrane domain forms oligomers in SDS micelles. Thus, the study would provide insights into how the transmembrane domain plays a role in regulating the IRE1α protein activity.

Indexed as

Amino Acid SequenceCell MembraneEndoribonucleasesHumansMicellesMolecular Sequence DataPeptide FragmentsProtein MultimerizationProtein Serine-Threonine KinasesProtein Structure, SecondaryProtein Structure, TertiarySodium Dodecyl SulfateEndoribonucleasesERN1 protein, humanMicellesPeptide FragmentsProtein Serine-Threonine KinasesSodium Dodecyl Sulfate

Identifiers

PMID23041190
PMCPMC3489956

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.