Evidence map›Paper›PMID 23040477›Full record

ArticleCell stem cell2012

Esrrb is a direct Nanog target gene that can substitute for Nanog function in pluripotent cells.

Nicola Festuccia, Rodrigo Osorno, Florian Halbritter, Violetta Karwacki-Neisius, Pablo Navarro, Douglas Colby, Frederick Wong, Adam Yates, Simon R Tomlinson, Ian Chambers

Open access · hybridAbstract read
In one paragraph

Article in Cell stem cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 203 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
203citing papers in PubMed, 2 pooled it
15.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

203 citing papers in PubMed, 2 syntheses or guidelines pooled it, 337 citations in OpenAlex.

  1. Pooled it
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143 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Nicola FestucciaMRC Centre for Regenerative Medicine, Institute for Stem Cell Research, School of Biological Sciences, University of Edinburgh, 5 Little France Drive, Edinburgh EH16 4UU, Scotland.
Rodrigo Osorno
Florian Halbritter
Violetta Karwacki-Neisius
Pablo Navarro
Douglas Colby
Frederick Wong
Adam Yates
Simon R Tomlinson
Ian Chambers
MRC Centre for Regenerative Medicine · GB

Funding

Medical Research Council G0901533Wellcome Trust
6 · The paper itself

Abstract

Embryonic stem cell (ESC) self-renewal efficiency is determined by the level of Nanog expression. However, the mechanisms by which Nanog functions remain unclear, and in particular, direct Nanog target genes are uncharacterized. Here we investigate ESCs expressing different Nanog levels and Nanog(-/-) cells with distinct functionally inducible Nanog proteins to identify Nanog-responsive genes. Surprisingly, these constitute a minor fraction of genes that Nanog binds. Prominent among Nanog-reponsive genes is Estrogen-related receptor b (Esrrb). Nanog binds directly to Esrrb, enhances binding of RNAPolII, and stimulates Esrrb transcription. Overexpression of Esrrb in ESCs maintains cytokine-independent self-renewal and pluripotency. Remarkably, this activity is retained in Nanog(-/-) ESCs. Moreover, Esrrb can reprogram Nanog(-/-) EpiSCs and can rescue stalled reprogramming in Nanog(-/-) pre-iPSCs. Finally, Esrrb deletion abolishes the defining ability of Nanog to confer LIF-independent ESC self-renewal. These findings are consistent with the functional placement of Esrrb downstream of Nanog.

Indexed as

AnimalsCell FusionCell LineCell ProliferationCell SurvivalCellular ReprogrammingChimeraEmbryo Culture TechniquesGene Expression ProfilingGene Expression Regulation, DevelopmentalHomeodomain ProteinsInterleukin-6MiceMicroarray AnalysisMutant ProteinsNanog Homeobox ProteinEsrrb protein, mouseHomeodomain ProteinsInterleukin-6Mutant ProteinsNanog Homeobox ProteinNanog protein, mouseReceptors, EstrogenReceptors, OSM-LIF

Identifiers

PMID23040477
PMCPMC3473361
OpenAlexW2076612253

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.