Evidence map›Paper›PMID 23040067›Full record

ArticleCell metabolism2012

Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes.

Ignasi Morán, Ildem Akerman, Martijn van de Bunt, Ruiyu Xie, Marion Benazra, Takao Nammo, Luis Arnes, Nikolina Nakić, Javier García-Hurtado, Santiago Rodríguez-Seguí and 23 more

Abstract read
In one paragraph

Article in Cell metabolism, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 258 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
258citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

258 citing papers in PubMed, 4 syntheses or guidelines pooled it.

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198 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Ignasi MoránGenomic Programming of Beta Cells Laboratory, Institut d'Investigacions Biomèdiques August Pi I Sunyer, 08036 Barcelona, Spain.
Ildem Akerman
Martijn van de Bunt
Ruiyu Xie
Marion Benazra
Takao Nammo
Luis Arnes
Nikolina Nakić
Javier García-Hurtado
Santiago Rodríguez-Seguí
Lorenzo Pasquali
Claire Sauty-Colace
Anthony Beucher
Raphael Scharfmann
Joris van Arensbergen
Paul R Johnson
Andrew Berry
Clarence Lee
Timothy Harkins
Valery Gmyr
François Pattou
Julie Kerr-Conte
Lorenzo Piemonti
Thierry Berney
Neil Hanley
Anna L Gloyn
Lori Sussel
Linda Langman
Kenneth L Brayman
Maike Sander
Mark I McCarthy
Philippe Ravassard
Jorge Ferrer

Funding

Coordinating Center for Beta Cell Biology ConsortiumU01DK072473 · NIDDK · VANDERBILT UNIVERSITY · PI MAGNUSON, MARK A · 2005 to 2014
$61.0M
Regulation of Pancreatic Islet Cell FateR01DK082590 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI LORI SUSSEL · 2009 to 2026
$7.3M
Epigenetic strategies for the in vitro generation of replacement beta cellsU01DK089567 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SANDER, MAIKE · 2010 to 2013
$4.7M
NIDDK NIH HHS 2U01 DK072473-06NIDDK NIH HHS R01 DK082590NIDDK NIH HHS U01 DK072473NIDDK NIH HHS U01 DK089567NIDDK NIH HHS U01-DK089567Wellcome Trust 088566Wellcome Trust 090532Wellcome Trust 095101Wellcome Trust WT 09510/Z/10/Z
6 · The paper itself

Abstract

A significant portion of the genome is transcribed as long noncoding RNAs (lncRNAs), several of which are known to control gene expression. The repertoire and regulation of lncRNAs in disease-relevant tissues, however, has not been systematically explored. We report a comprehensive strand-specific transcriptome map of human pancreatic islets and β cells, and uncover >1100 intergenic and antisense islet-cell lncRNA genes. We find islet lncRNAs that are dynamically regulated and show that they are an integral component of the β cell differentiation and maturation program. We sequenced the mouse islet transcriptome and identify lncRNA orthologs that are regulated like their human counterparts. Depletion of HI-LNC25, a β cell-specific lncRNA, downregulated GLIS3 mRNA, thus exemplifying a gene regulatory function of islet lncRNAs. Finally, selected islet lncRNAs were dysregulated in type 2 diabetes or mapped to genetic loci underlying diabetes susceptibility. These findings reveal a new class of islet-cell genes relevant to β cell programming and diabetes pathophysiology.

Indexed as

AnimalsChromatinDiabetes Mellitus, Type 2DNA-Binding ProteinsDown-RegulationGene Expression ProfilingGenetic LociHumansInsulin-Secreting CellsMiceRepressor ProteinsRNA, Long NoncodingRNA, MessengerTrans-ActivatorsChromatinDNA-Binding ProteinsGlis3 protein, mouseRepressor ProteinsRNA, Long NoncodingRNA, MessengerTrans-Activators

Identifiers

PMID23040067
PMCPMC3475176

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.