Evidence map›Paper›PMID 23038171›Full record

ArticleThe ISME journal2013

Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.

Ludovic Giloteaux, Dawn E Holmes, Kenneth H Williams, Kelly C Wrighton, Michael J Wilkins, Alison P Montgomery, Jessica A Smith, Roberto Orellana, Courtney A Thompson, Thomas J Roper and 2 more

Abstract read
In one paragraph

Article in The ISME journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Transcriptional Control ofApplied and environmental microbiology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Development of a whole-cell biosensor based on an ArsR-PEnvironmental science and ecotechnology · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Arsenic Detoxification by Geobacter Species.Applied and environmental microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ludovic GiloteauxDepartment of Microbiology, University of Massachusetts, Amherst, MA 01003-9298, USA. lgilotea@microbio.umass.edu
Dawn E Holmes
Kenneth H Williams
Kelly C Wrighton
Michael J Wilkins
Alison P Montgomery
Jessica A Smith
Roberto Orellana
Courtney A Thompson
Thomas J Roper
Philip E Long
Derek R Lovley

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The possibility of arsenic release and the potential role of Geobacter in arsenic biogeochemistry during in situ uranium bioremediation was investigated because increased availability of organic matter has been associated with substantial releases of arsenic in other subsurface environments. In a field experiment conducted at the Rifle, CO study site, groundwater arsenic concentrations increased when acetate was added. The number of transcripts from arrA, which codes for the α-subunit of dissimilatory As(V) reductase, and acr3, which codes for the arsenic pump protein Acr3, were determined with quantitative reverse transcription-PCR. Most of the arrA (>60%) and acr3-1 (>90%) sequences that were recovered were most similar to Geobacter species, while the majority of acr3-2 (>50%) sequences were most closely related to Rhodoferax ferrireducens. Analysis of transcript abundance demonstrated that transcription of acr3-1 by the subsurface Geobacter community was correlated with arsenic concentrations in the groundwater. In contrast, Geobacter arrA transcript numbers lagged behind the major arsenic release and remained high even after arsenic concentrations declined. This suggested that factors other than As(V) availability regulated the transcription of arrA in situ, even though the presence of As(V) increased the transcription of arrA in cultures of Geobacter lovleyi, which was capable of As(V) reduction. These results demonstrate that subsurface Geobacter species can tightly regulate their physiological response to changes in groundwater arsenic concentrations. The transcriptomic approach developed here should be useful for the study of a diversity of other environments in which Geobacter species are considered to have an important influence on arsenic biogeochemistry.

Indexed as

Genes, BacterialAcetatesArsenate ReductasesArsenicBiodegradation, EnvironmentalColoradoGene Expression Regulation, BacterialGeobacterGroundwaterTranscriptomeUraniumAcetatesArsenate ReductasesArsenicUranium

Identifiers

PMID23038171
PMCPMC3554400

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.