Evidence map›Paper›PMID 23036855›Full record

ArticleComputer methods and programs in biomedicine2013

TreeVis: a MATLAB-based tool for tree visualization.

Peng Qiu, Sylvia K Plevritis

Abstract read
In one paragraph

Article in Computer methods and programs in biomedicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data.IEEE/ACM transactions on computational biology and bioinformatics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Peng QiuDepartment of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, USA.
Sylvia K Plevritis

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
Integrative Pipeline for Analysis & Translational Application of TCGA Data (GDAC)U24CA143883 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AKBANI, REHAN, MILLS, GORDON B. · 2009 to 2016
$10.6M
Computational Modeling of Cancer BiologyU56CA112973 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2004 to 2009
$2.9M
NCI NIH HHS P30 CA016672NCI NIH HHS U24 CA143883NCI NIH HHS U24 CA143883 02 S1NCI NIH HHS U56 CA112973
6 · The paper itself

Abstract

Network-based analyses of high-dimensional biological data often produce results in the form of tree structures. Generating easily interpretable layouts to visualize these tree structures is a non-trivial task. We present a new visualization algorithm to generate two-dimensional layouts for complex tree structures. Implementations in both MATLAB and R are provided.

Indexed as

AlgorithmsSoftwareCell Line, TumorComputational BiologyComputer GraphicsGenome, HumanHumansMethylationNeoplasmsUser-Computer Interface

Identifiers

PMID23036855
PMCPMC3508366

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.