Evidence map›Paper›PMID 23035785›Full record

ArticleBiochemistry2012

1-methylthio-D-xylulose 5-phosphate methylsulfurylase: a novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum.

Benjamin P Warlick, Bradley S Evans, Tobias J Erb, Udipi A Ramagopal, Jaya Sriram, Heidi J Imker, J Michael Sauder, Jeffrey B Bonanno, Stephen K Burley, F Robert Tabita and 3 more

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Microbial pathway for anaerobic 5'-methylthioadenosine metabolism coupled to ethylene formation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  9. Article
  10. Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways.Metabolomics : Official journal of the Metabolomic Society · 2014
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Benjamin P WarlickDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Bradley S Evans
Tobias J Erb
Udipi A Ramagopal
Jaya Sriram
Heidi J Imker
J Michael Sauder
Jeffrey B Bonanno
Stephen K Burley
F Robert Tabita
Steven C Almo
Jonathan S Sweedler
John A Gerlt
Albert Einstein College of Medicine · USCenter Point · USThe Ohio State University · USUniversity of Illinois Urbana-Champaign · US

Funding

SUBPROJECT 5U54GM074945 · NIGMS · SGX PHARMACEUTICALS, INC. · PI BURLEY, STEPHEN KEVIN · 2005 to 2009
$46.2M
Core H: MicrobiologyU54GM093342 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI CRONAN, JOHN E. · 2010 to 2015
$34.6M
Theoretical and Computational ApproachesP01GM071790 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI RAUSHEL, FRANK M. · 2004 to 2013
$15.5M
Structure and Function of U6 Spliceosomal RNAR01GM065166 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BROW, DAVID A, BUTCHER, SAMUEL E · 2002 to 2016
$3.5M
STRUCTURAL BASES FOR CATALYTIC EFFICIENCY AND SUBSTRATE SPECIFICITYR01GM065155 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GERLT, JOHN A · 2003 to 2011
$3.2M
One Enzyme for Two Distinct MetabolismsR01GM095742 · NIGMS · OHIO STATE UNIVERSITY · PI TABITA, F ROBERT · 2011 to 2014
$1.1M
NIGMS NIH HHS P01 GM071790NIGMS NIH HHS P01GM071790NIGMS NIH HHS R01 GM065155NIGMS NIH HHS R01 GM065166NIGMS NIH HHS R01GM065166NIGMS NIH HHS R01 GM095742NIGMS NIH HHS R01GM095742NIGMS NIH HHS U54 GM074945NIGMS NIH HHS U54GM074945NIGMS NIH HHS U54 GM093342NIGMS NIH HHS U54GM093342
6 · The paper itself

Abstract

Rhodospirillum rubrum produces 5-methylthioadenosine (MTA) from S-adenosylmethionine in polyamine biosynthesis; however, R. rubrum lacks the classical methionine salvage pathway. Instead, MTA is converted to 5-methylthio-d-ribose 1-phosphate (MTR 1-P) and adenine; MTR 1-P is isomerized to 1-methylthio-d-xylulose 5-phosphate (MTXu 5-P) and reductively dethiomethylated to 1-deoxy-d-xylulose 5-phosphate (DXP), an intermediate in the nonmevalonate isoprenoid pathway [Erb, T. J., et al. (2012) Nat. Chem. Biol., in press]. Dethiomethylation, a novel route to DXP, is catalyzed by MTXu 5-P methylsulfurylase. An active site Cys displaces the enolate of DXP from MTXu 5-P, generating a methyl disulfide intermediate.

Indexed as

Metabolic Networks and PathwaysNuclear Magnetic Resonance, BiomolecularPentosephosphatesRhodospirillum rubrumRibosemonophosphatesSulfurtransferasesThioglycosides1-deoxylulose 5-phosphate1-methylthio-D-xylulose 5-phosphate methylsulfurylase, Rhodospirillum rubrum5'-methylthioribose 1-phosphatePentosephosphatesRibosemonophosphatesSulfurtransferasesThioglycosidesxylulose-5-phosphate

Identifiers

PMID23035785
PMCPMC3490199
OpenAlexW2328416683

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.