Evidence map›Paper›PMID 23035246›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis.

Duo Lu, Jan Silhan, James T MacDonald, Elisabeth P Carpenter, Kirsten Jensen, Christoph M Tang, Geoff S Baldwin, Paul S Freemont

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  7. Capturing snapshots of APE1 processing DNA damage.Nature structural & molecular biology · 2015
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Duo LuCentre for Structural Biology, Division of Molecular Biosciences and Department of Microbiology, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.
Jan Silhan
James T MacDonald
Elisabeth P Carpenter
Kirsten Jensen
Christoph M Tang
Geoff S Baldwin
Paul S Freemont
Imperial College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H012249/1Medical Research Council G0900888Wellcome Trust 092809
6 · The paper itself

Abstract

Base excision repair (BER) is a highly conserved DNA repair pathway throughout all kingdoms from bacteria to humans. Whereas several enzymes are required to complete the multistep repair process of damaged bases, apurinic-apyrimidic (AP) endonucleases play an essential role in enabling the repair process by recognizing intermediary abasic sites cleaving the phosphodiester backbone 5' to the abasic site. Despite extensive study, there is no structure of a bacterial AP endonuclease bound to substrate DNA. Furthermore, the structural mechanism for AP-site cleavage is incomplete. Here we report a detailed structural and biochemical study of the AP endonuclease from Neisseria meningitidis that has allowed us to capture structural intermediates providing more complete snapshots of the catalytic mechanism. Our data reveal subtle differences in AP-site recognition and kinetics between the human and bacterial enzymes that may reflect different evolutionary pressures.

Indexed as

Models, MolecularCrystallography, X-RayDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA RepairFuransHumansMolecular StructureNeisseria meningitidisProtein ConformationProtein FoldingAPEX1 protein, humanDNADNA-(Apurinic or Apyrimidinic Site) LyaseFuranstetrahydrofuran

Identifiers

PMID23035246
PMCPMC3479458
OpenAlexW1974370838

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.