Evidence map›Paper›PMID 23035211›Full record

ArticleJournal of virology2012

A small-RNA enhancer of viral polymerase activity.

Jasmine T Perez, Ivan Zlatev, Shilpa Aggarwal, Sailakshmi Subramanian, Ravi Sachidanandam, Baek Kim, Muthiah Manoharan, Benjamin R tenOever

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  6. Review
  7. Review
  8. Article
  9. Ms1 RNA Interacts With the RNA Polymerase Core inFrontiers in microbiology · 2022
    Article
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  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. RNA ligands activate the Machupo virus polymerase and guide promoter usage.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Jasmine T PerezDepartment of Microbiology, Mount Sinai School of Medicine, New York, New York, USA.
Ivan Zlatev
Shilpa Aggarwal
Sailakshmi Subramanian
Ravi Sachidanandam
Baek Kim
Muthiah Manoharan
Benjamin R tenOever
Icahn School of Medicine at Mount Sinai · USAlnylam Pharmaceuticals (United States) · USUniversity of Rochester Medical Center · US

Funding

The Biology of Influenza A Virus-Generated Small RNAsR01AI093571 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI TENOEVER, BENJAMIN R. · 2011 to 2015
$2.1M
NIAID NIH HHS HHSN266200700008CNIAID NIH HHS R01 AI093571PHS HHS A1093571-01
6 · The paper itself

Abstract

Influenza A virus (IAV) is an unremitting virus that results in significant morbidity and mortality worldwide. Key to the viral life cycle is the RNA-dependent RNA polymerase (RdRp), a heterotrimeric complex responsible for both transcription and replication of the segmented genome. Here, we demonstrate that the viral polymerase utilizes a small RNA enhancer to regulate enzymatic activity and maintain stoichiometric balance of the viral genome. We demonstrate that IAV synthesizes small viral RNAs (svRNAs) that interact with the viral RdRp in order to promote genome replication in a segment-specific manner. svRNAs localize to the nucleus, the site of IAV replication, are synthesized from the positive-sense genomic intermediate, and interact within a novel RNA binding channel of the polymerase PA subunit. Synthetic svRNAs promote polymerase activity in vitro, while loss of svRNA inhibits viral RNA synthesis in a segment-specific manner. Taking these observations together, we mechanistically define svRNA as a small regulatory enhancer RNA, which functions to promote genome replication and maintain segment balance through allosteric modulation of polymerase activity.

Indexed as

Blotting, WesternCell LineGenome, ViralHumansImmunoprecipitationInfluenza A virusRNA-Dependent RNA PolymeraseRNA-Dependent RNA Polymerase

Identifiers

PMID23035211
PMCPMC3503082
OpenAlexW2162912650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.