Evidence map›Paper›PMID 23035125›Full record

ArticleThe Journal of biological chemistry2012

Epigenetic silencing of the chaperone Cosmc in human leukocytes expressing tn antigen.

Rongjuan Mi, Lina Song, Yingchun Wang, Xiaokun Ding, Junwei Zeng, Sylvain Lehoux, Rajindra P Aryal, Jianmei Wang, Vanja K Crew, Irma van Die and 3 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. C1GALT1 in health and disease.Oncology letters · 2021
    Review
  10. Epigenetic Regulation of Glycosylation in Cancer and Other Diseases.International journal of molecular sciences · 2021
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. DifferentialFrontiers in oncology · 2020
    Article
  16. Article
  17. Cosmc overexpression enhances malignancies in human colon cancer.Journal of cellular and molecular medicine · 2020
    Article
  18. Article
  19. Article
  20. Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.Database : the journal of biological databases and curation · 2019
    Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Rongjuan MiDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Lina Song
Yingchun Wang
Xiaokun Ding
Junwei Zeng
Sylvain Lehoux
Rajindra P Aryal
Jianmei Wang
Vanja K Crew
Irma van Die
Arlene B Chapman
Richard D Cummings
Tongzhong Ju
Emory University · USAmsterdam UMC Location VUmc · NLBristol Institute for Transfusion Sciences · GB

Funding

Genetic Basis of Non-Familial IgA NephropathyR01DK080876 · NIDDK · EMORY UNIVERSITY · PI JU, TONGZHONG · 2008 to 2012
$1.5M
NIDDK NIH HHS R01 DK080876NIDDK NIH HHS R01DK80876
6 · The paper itself

Abstract

Cosmc is the specific molecular chaperone in the endoplasmic reticulum for T-synthase, a Golgi β3-galactosyltransferase that generates the core 1 O-glycan, Galβ1-3GalNAcα-Ser/Thr, in glycoproteins. Dysfunctional Cosmc results in the formation of inactive T-synthase and consequent expression of the Tn antigen (GalNAcα1-Ser/Thr), which is associated with several human diseases. However, the molecular regulation of expression of Cosmc, which is encoded by a single gene on Xq24, is poorly understood. Here we show that epigenetic silencing of Cosmc through hypermethylation of its promoter leads to loss of Cosmc transcripts in Tn4 cells, an immortalized B cell line from a male patient with a Tn-syndrome-like phenotype. These cells lack T-synthase activity and express the Tn antigen. Treatment of cells with 5-aza-2'-deoxycytidine causes restoration of Cosmc transcripts, restores T-synthase activity, and reduces Tn antigen expression. Bisulfite sequencing shows that CG dinucleotides in the Cosmc core promoter are hypermethylated. Interestingly, several other X-linked genes associated with glycosylation are not silenced in Tn4 cells, and we observed no correlation of a particular DNA methyltransferase to aberrant methylation of Cosmc in these cells. Thus, hypermethylation of the Cosmc promoter in Tn4 cells is relatively specific. Epigenetic silencing of Cosmc provides another mechanism underlying the abnormal expression of the Tn antigen, which may be important in understanding aberrant Tn antigen expression in human diseases, including IgA nephropathy and cancer.

Indexed as

Epigenesis, GeneticGene Expression RegulationAmino Acid SequenceAntigens, Tumor-Associated, CarbohydrateCell Line, TumorCell NucleusCytosolGene SilencingGlycosylationGlycosyltransferasesHumansLeukocytesMaleMethylationMolecular ChaperonesMolecular Sequence DataAntigens, Tumor-Associated, CarbohydrateC1GALT1C1 protein, humanGlycosyltransferasesMolecular ChaperonesTn antigen

Identifiers

PMID23035125
PMCPMC3510848
OpenAlexW2089542491

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.