Evidence map›Paper›PMID 23035093›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2012

Optimization of a GCaMP calcium indicator for neural activity imaging.

Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun and 22 more

Abstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 730 papers.

0numbers the graph read from it
0cells of the map it votes in
730citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

730 citing papers in PubMed.

  1. Article
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  6. Review
  7. Precise calcium-to-spike inference using biophysical generative models.bioRxiv : the preprint server for biology · 2026
    Article
  8. A Central Somatic Transmission Mediates Proprioceptive Facilitation of Muscle Pain.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  9. Redesign of Calmodulin for Genetically Encoded ZnChemical & biomedical imaging · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Calcium Imaging Studies in Enteric Glia.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  18. Article
  19. Review
  20. Article

670 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

Jasper AkerboomHoward Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia 20147, USA.
Tsai-Wen Chen
Trevor J Wardill
Lin Tian
Jonathan S Marvin
Sevinç Mutlu
Nicole Carreras Calderón
Federico Esposti
Bart G Borghuis
Xiaonan Richard Sun
Andrew Gordus
Michael B Orger
Ruben Portugues
Florian Engert
John J Macklin
Alessandro Filosa
Aman Aggarwal
Rex A Kerr
Ryousuke Takagi
Sebastian Kracun
Eiji Shigetomi
Baljit S Khakh
Herwig Baier
Leon Lagnado
Samuel S-H Wang
Cornelia I Bargmann
Bruce E Kimmel
Vivek Jayaraman
Karel Svoboda
Douglas S Kim
Eric R Schreiter
Loren L Looger

Funding

Imaging adaptive cerebellar processing at cellular resolution in awake miceR01NS045193 · NINDS · PRINCETON UNIVERSITY · PI WANG, SAMUEL SHENG-HUNG · 2003 to 2024
$7.5M
Howard Hughes Medical InstituteMedical Research Council MC_U105178794NINDS NIH HHS R01 NS045193
6 · The paper itself

Abstract

Genetically encoded calcium indicators (GECIs) are powerful tools for systems neuroscience. Recent efforts in protein engineering have significantly increased the performance of GECIs. The state-of-the art single-wavelength GECI, GCaMP3, has been deployed in a number of model organisms and can reliably detect three or more action potentials in short bursts in several systems in vivo. Through protein structure determination, targeted mutagenesis, high-throughput screening, and a battery of in vitro assays, we have increased the dynamic range of GCaMP3 by severalfold, creating a family of "GCaMP5" sensors. We tested GCaMP5s in several systems: cultured neurons and astrocytes, mouse retina, and in vivo in Caenorhabditis chemosensory neurons, Drosophila larval neuromuscular junction and adult antennal lobe, zebrafish retina and tectum, and mouse visual cortex. Signal-to-noise ratio was improved by at least 2- to 3-fold. In the visual cortex, two GCaMP5 variants detected twice as many visual stimulus-responsive cells as GCaMP3. By combining in vivo imaging with electrophysiology we show that GCaMP5 fluorescence provides a more reliable measure of neuronal activity than its predecessor GCaMP3. GCaMP5 allows more sensitive detection of neural activity in vivo and may find widespread applications for cellular imaging in general.

Indexed as

Calcium SignalingSynaptic TransmissionAnimalsAstrocytesCaenorhabditis elegansCrystallography, X-RayDrosophila melanogasterFemaleFluorescent DyesFluorometryGenes, SyntheticGenetic VectorsGreen Fluorescent ProteinsHEK293 CellsHippocampusHumansFluorescent DyesGreen Fluorescent ProteinsPeptidesRecombinant Fusion Proteins

Identifiers

PMID23035093
PMCPMC3482105

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.