Evidence map›Paper›PMID 23034355›Full record

ArticleJournal of the Royal Society, Interface2013

Three-dimensional tracking and behaviour monitoring of multiple fruit flies.

Reza Ardekani, Anurag Biyani, Justin E Dalton, Julia B Saltz, Michelle N Arbeitman, John Tower, Sergey Nuzhdin, Simon Tavaré

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  3. Article
  4. Review
  5. Article
  6. Article
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  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Automated Tracking of Drosophila Specimens.Sensors (Basel, Switzerland) · 2015
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Reza ArdekaniMolecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089-2910, USA.
Anurag Biyani
Justin E Dalton
Julia B Saltz
Michelle N Arbeitman
John Tower
Sergey Nuzhdin
Simon Tavaré

Funding

Implications of haplotype structure in the human genomeP50HG002790 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TAVARE, SIMON · 2003 to 2013
$29.9M
Genes Underlying Reproductive Behavior and PhysiologyR01GM073039 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ARBEITMAN, MICHELLE N · 2006 to 2020
$4.4M
AGING-SPECIFIC GENE EXPRESSION IN DROSOPHILAR01AG011833 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TOWER, JOHN GERARD · 1994 to 2013
$2.8M
NHGRI NIH HHS P50 HG002790NHGRI NIH HHS P50HG002790NIA NIH HHS R01 AG011833NIGMS NIH HHS R01 GM073039NIGMS NIH HHS R01GM073039
6 · The paper itself

Abstract

The increasing interest in the investigation of social behaviours of a group of animals has heightened the need for developing tools that provide robust quantitative data. Drosophila melanogaster has emerged as an attractive model for behavioural analysis; however, there are still limited ways to monitor fly behaviour in a quantitative manner. To study social behaviour of a group of flies, acquiring the position of each individual over time is crucial. There are several studies that have tried to solve this problem and make this data acquisition automated. However, none of these studies has addressed the problem of keeping track of flies for a long period of time in three-dimensional space. Recently, we have developed an approach that enables us to detect and keep track of multiple flies in a three-dimensional arena for a long period of time, using multiple synchronized and calibrated cameras. After detecting flies in each view, correspondence between views is established using a novel approach we call the 'sequential Hungarian algorithm'. Subsequently, the three-dimensional positions of flies in space are reconstructed. We use the Hungarian algorithm and Kalman filter together for data association and tracking. We evaluated rigorously the system's performance for tracking and behaviour detection in multiple experiments, using from one to seven flies. Overall, this system presents a powerful new method for studying complex social interactions in a three-dimensional environment.

Indexed as

AlgorithmsAnimalsBehavior, AnimalDrosophila melanogasterVideo Recording

Identifiers

PMID23034355
PMCPMC3565780

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.