Evidence map›Paper›PMID 23030719›Full record

ArticleACS chemical biology2013

Sugar-binding proteins from fish: selection of high affinity "lambodies" that recognize biomedically relevant glycans.

Xia Hong, Mark Z Ma, Jeffrey C Gildersleeve, Sudipa Chowdhury, Joseph J Barchi, Roy A Mariuzza, Michael B Murphy, Li Mao, Zeev Pancer

Abstract read
In one paragraph

Article in ACS chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Characterization of Hagfish (Journal of immunology (Baltimore, Md. : 1950) · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 2 countries.

Xia HongInstitute of Marine and Environmental Technology and Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Columbus Center Suite 236, 701 East Pratt St, Baltimore, Maryland 21202, United States.
Mark Z Ma
Jeffrey C Gildersleeve
Sudipa Chowdhury
Joseph J Barchi
Roy A Mariuzza
Michael B Murphy
Li Mao
Zeev Pancer
University of Maryland, Baltimore · USCenter for Cancer Research · USColumbus Center · USFrederick National Laboratory for Cancer Research · USGeneral Electric (Spain) · ESNational Cancer Institute · USUniversity of Maryland, College Park · US

Funding

Structural Basis of Immune Recognition of Glycosylated AntigensU54GM062116 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SASISEKHARAN, RAM · 2001 to 2010
$80.3M
Carbohydrate Microarray Profiling of Glycan-Binding Antibodies and LectinsZIABC010740 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GILDERSLEEVE, JEFFREY · 2009 to 2025
$10.7M
Protein-Glycan Interaction Resource of the CFGR24GM098791 · NIGMS · EMORY UNIVERSITY · PI CUMMINGS, RICHARD D, PAULSON, JAMES C · 2011 to 2013
$2.6M
STRUCTURE AND FUNCTION OF T CELL ANTIGEN RECEPTORSR01AI036900 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI MARIUZZA, ROY A · 1995 to 2014
$1.8M
HDGF: a novel biomarker and therapetic target of lung cancerR01CA126818 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MAO, LI · 2008 to 2012
$1.6M
ROLE OF DNA METHYLTRANSFERASE 3B IN LUNG TUMORIGENESISR01CA136635 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI MAO, LI · 2009 to 2014
$1.5M
Recombinant Antibodies from the Sea LampreyR21AI083892 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MARIUZZA, ROY A, PANCER, ZEEV · 2009 to 2010
$413k
Intramural NIH HHSNCI NIH HHS CA126818NCI NIH HHS CA136635NCI NIH HHS R01 CA126818NCI NIH HHS R01 CA136635NIAID NIH HHS AI083892NIAID NIH HHS R01 AI036900NIAID NIH HHS R21 AI083892NIGMS NIH HHS GM098791NIGMS NIH HHS GM62116
6 · The paper itself

Abstract

Glycan-binding proteins are important for a wide variety of basic research and clinical applications, but proteins with high affinity and selectivity for carbohydrates are difficult to obtain. Here we describe a facile and cost-effective strategy to generate monoclonal lamprey antibodies, called lambodies, that target glycan determinants. We screened a library of yeast surface-displayed (YSD) lamprey variable lymphocyte receptors (VLR) for clones that can selectively bind various biomedically important glycotopes. These glycoconjugates included tumor-associated carbohydrate antigens (Tn and TFα), Lewis antigens (LeA and LeX), N-glycolylneuraminic acid, targets of broadly neutralizing HIV antibodies (poly-Man9 and the HIV gp120), and the glycoproteins asialo-ovine submaxillary mucin (aOSM) and asialo-human glycophorin A (aGPA). We isolated clones that bind each of these targets in a glycan-dependent manner and with very strong binding constants, for example, 6.2 nM for Man9 and 44.7 nM for gp120, determined by surface plasmon resonance (SPR). One particular lambody, VLRB.aGPA.23, was shown by glycan array analysis to be selective for the blood group H type 3 trisaccharide (BG-H3, Fucα1-2Galβ1-3GalNAcα), aGPA, and TFα (Galβ1-3GalNAcα), with affinity constants of 0.2, 1, and 8 nM, respectively. In human tissue microarrays this lambody selectively detected cancer-associated carbohydrate antigens in 14 different types of cancers. It stained 27% of non-small cell lung cancer (NSCLC) samples in a pattern that correlated with poor patient survival. Lambodies with exquisite affinity and selectivity for glycans may find myriad uses in glycobiology and biomedical research.

Indexed as

Antigens, NeoplasmAnimalsAntibodies, MonoclonalBlotting, WesternCarbohydrate SequenceCell Line, TumorFlow CytometryHumansLampreysLung NeoplasmsMicroarray AnalysisMolecular Sequence DataPolysaccharidesProtein BindingReference StandardsAntibodies, MonoclonalAntigens, NeoplasmPolysaccharides

Identifiers

PMID23030719
PMCPMC3756686
OpenAlexW2026866389

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.