Evidence map›Paper›PMID 23029476›Full record

ArticlePloS one2012

Copy number variation in subjects with major depressive disorder who attempted suicide.

Roy H Perlis, Douglas Ruderfer, Steven P Hamilton, Carl Ernst

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Genetics and epigenetics of self-injurious thoughts and behaviors: Systematic review of the suicide literature and methodological considerations.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2022
    Pooled it
  2. Review
  3. Peripheral Expression ofPsychiatry and clinical psychopharmacology · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. The Genetics of Stress-Related Disorders: PTSD, Depression, and Anxiety Disorders.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2016
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Genomic structural variation in affective, anxiety, and stress-related disorders.Journal of neural transmission (Vienna, Austria : 1996) · 2015
    Review
  14. The molecular bases of the suicidal brain.Nature reviews. Neuroscience · 2014
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Roy H PerlisCenter for Human Genetic Research, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America.
Douglas Ruderfer
Steven P Hamilton
Carl Ernst

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSuicide is one of the top ten leading causes of death in North America and represents a major public health burden, particularly for people with Major Depressive disorder (MD). Many studies have suggested that suicidal behavior runs in families, however, identification of genomic loci that drive this efffect remain to be identified. METHODOLOGY/PRINCIPAL

findingsUsing subjects collected as part of STAR D, we genotyped 189 subjects with MD with history of a suicide attempt and 1073 subjects with Major Depressive disorder that had never attempted suicide. Copy Number Variants (CNVs) were called in Birdsuite and analyzed in PLINK. We found a set of CNVs present in the suicide attempter group that were not present in in the non-attempter group including in SNTG2 and MACROD2 - two brain expressed genes previously linked to psychopathology; however, these results failed to reach genome-wide signifigance.

conclusionsThese data suggest potential CNVs to be investigated further in relation to suicide attempts in MD using large sample sizes.

Indexed as

DNA Copy Number VariationsBrainCohort StudiesFemaleGene Expression ProfilingGenome-Wide Association StudyGenotypeHumansMajor Depressive DisorderMaleMarkov ChainsMembrane GlycoproteinsMembrane ProteinsMuscle ProteinsNorth AmericaOligonucleotide Array Sequence AnalysisFLRT3 protein, humanMembrane GlycoproteinsMembrane ProteinsMuscle ProteinsSNTG2 protein, human

Identifiers

PMID23029476
PMCPMC3459919

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.