Evidence map›Paper›PMID 23029249›Full record

ArticlePloS one2012

West Nile virus (WNV) replication is independent of autophagy in mammalian cells.

Rianna Vandergaast, Brenda L Fredericksen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 55 citations in OpenAlex.

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  19. The Multifaceted Roles of Autophagy in Flavivirus-Host Interactions.International journal of molecular sciences · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Rianna VandergaastDepartment of Cell Biology and Molecular Genetics University of Maryland, College Park, MD, USA.
Brenda L Fredericksen
University of Maryland, College Park · US

Funding

West Nile virus interactions with the innate antiviral responseR01AI083397 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI FREDERICKSEN, BRENDA L. · 2009 to 2012
$1.3M
NIAID NIH HHS AI083397NIAID NIH HHS R01 AI083397
6 · The paper itself

Abstract

Autophagy is a homeostatic process responsible for recycling cytosolic proteins and organelles. Moreover, this pathway contributes to the cell's intrinsic innate defenses. While many viruses have evolved mechanisms to antagonize the antiviral effects of the autophagy pathway, others subvert autophagy to facilitate replication. Here, we have investigated the role of autophagy in West Nile virus (WNV) replication. Experiments in cell lines derived from a variety of sources, including the kidney, liver, skin, and brain, indicated that WNV replication does not upregulate the autophagy pathway. Furthermore, WNV infection did not inhibit rapamycin-induced autophagy, suggesting that WNV does not disrupt the authophagy signaling cascade. Perturbation of the autophagy pathway by depletion of the major autophagy factors Atg5 or Atg7 had no effect on WNV infectious particle production, indicating that WNV does not require a functional autophagy pathway for replication. Taken together, the results of our study provide evidence that WNV, unlike several other viruses of the family Flaviviridae, does not significantly interact with the conventional autophagy pathway in mammalian cells.

Indexed as

AutophagyVirus ReplicationAdaptor Proteins, Signal TransducingAnimalsAstrocytesAutophagy-Related Protein 5Chlorocebus aethiopsFibroblastsGene Knockdown TechniquesHEK293 CellsHost-Pathogen InteractionsHumansMicrotubule-Associated ProteinsPrimary Cell CultureRNA InterferenceSequestosome-1 ProteinAdaptor Proteins, Signal TransducingATG5 protein, humanAutophagy-Related Protein 5MAP1LC3B protein, humanMicrotubule-Associated ProteinsSequestosome-1 ProteinSQSTM1 protein, human

Identifiers

PMID23029249
PMCPMC3448696
OpenAlexW2045481007

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.