ArticlePloS one2012
A high density consensus genetic map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check.
Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 42 papers.
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Who cites it
42 citing papers in PubMed.
- Marker-Assisted Hybridization and Selection for Fiber Quality Improvement in Naturally Colored Cotton (Plants (Basel, Switzerland) · 2025Article
- Genetic basis and role of exotic accessions in cultivated cotton fiber quality improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Features of Chromosome Introgression fromPlants (Basel, Switzerland) · 2022Article
- Identification of small effect quantitative trait loci of plant architectural, flowering, and early maturity traits in reciprocal interspecific introgression population in cotton.Frontiers in plant science · 2022Article
- Inheritance, QTLs, and Candidate Genes of Lint Percentage in Upland Cotton.Frontiers in genetics · 2022Review
- Germplasm Resources and Strategy for Genetic Breeding ofFrontiers in plant science · 2022Review
- Genetic Diversity, QTL Mapping, and Marker-Assisted Selection Technology in Cotton (Frontiers in plant science · 2021Review
- Genetic Analysis ofThe plant genome · 2018Article
- A consensus linkage map of lentil based on DArT markers from three RIL mapping populations.PloS one · 2018Article
- Genetic differentiation and spatiotemporal history of diploidy and tetraploidy ofEcology and evolution · 2017Article
- Genetic diversity, linkage disequilibrium, and association mapping analyses of Gossypium barbadense L. germplasm.PloS one · 2017Article
- Insights Into Upland Cotton (Genomics insights · 2017Article
- Cytogenetic maps of homoeologous chromosomes AComparative cytogenetics · 2017Article
- High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L.BMC genomics · 2016Article
- Narrowing down the single homoeologous FaPFRU locus controlling flowering in cultivated octoploid strawberry using a selective mapping strategy.Plant biotechnology journal · 2016Article
- Detection and validation of one stable fiber strength QTL on c9 in tetraploid cotton.Molecular genetics and genomics : MGG · 2016Article
- Applications of DNA Technologies in Agriculture.Current genomics · 2016Article
- A Genetic Map Between Gossypium hirsutum and the Brazilian Endemic G. mustelinum and Its Application to QTL Mapping.G3 (Bethesda, Md.) · 2016Article
- Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- Mapping by sequencing in cotton (Gossypium hirsutum) line MD52ne identified candidate genes for fiber strength and its related quality attributes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
Corrections and comments
- Erratum issued
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A consensus genetic map of tetraploid cotton was constructed using six high-density maps and after the integration of a sequence-based marker redundancy check. Public cotton SSR libraries (17,343 markers) were curated for sequence redundancy using 90% as a similarity cutoff. As a result, 20% of the markers (3,410) could be considered as redundant with some other markers. The marker redundancy information had been a crucial part of the map integration process, in which the six most informative interspecific Gossypium hirsutum×G. barbadense genetic maps were used for assembling a high density consensus (HDC) map for tetraploid cotton. With redundant markers being removed, the HDC map could be constructed thanks to the sufficient number of collinear non-redundant markers in common between the component maps. The HDC map consists of 8,254 loci, originating from 6,669 markers, and spans 4,070 cM, with an average of 2 loci per cM. The HDC map presents a high rate of locus duplications, as 1,292 markers among the 6,669 were mapped in more than one locus. Two thirds of the duplications are bridging homoeologous A(T) and D(T) chromosomes constitutive of allopolyploid cotton genome, with an average of 64 duplications per A(T)/D(T) chromosome pair. Sequences of 4,744 mapped markers were used for a mutual blast alignment (BBMH) with the 13 major scaffolds of the recently released Gossypium raimondii genome indicating high level of homology between the diploid D genome and the tetraploid cotton genetic map, with only a few minor possible structural rearrangements. Overall, the HDC map will serve as a valuable resource for trait QTL comparative mapping, map-based cloning of important genes, and better understanding of the genome structure and evolution of tetraploid cotton.
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