Evidence map›Paper›PMID 23028799›Full record

ArticlePloS one2012

Role of single nucleotide polymorphisms of KIF1B gene in HBV-associated viral hepatitis.

Ahmed Al-Qahtani, Mashael Al-Anazi, Nisha A Viswan, Nisreen Khalaf, Ayman A Abdo, Faisal M Sanai, Hamad Al-Ashgar, Mohammed Al-Ahdal

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Biomarkers for hepatocellular cancer.World journal of hepatology · 2020
    Review
  5. Review
  6. Review
  7. Genetic alterations in hepatocellular carcinoma: An update.World journal of gastroenterology · 2016
    Review
  8. Article
  9. Genome-Wide Association Study Reveals Host Genetic Factors for Liver Diseases.Journal of clinical and translational hepatology · 2013
    Review
  10. Hepatitis B virus and host factors.Hepatobiliary surgery and nutrition · 2013
    Article
  11. Article
  12. Association of PRKAA1 gene polymorphisms with chronic hepatitis B virus infection in Chinese Han population.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ahmed Al-QahtaniDepartment of Infection and Immunity, Research Center, King Faisal Specialist Hospital & Research Center, Riyadh, Saudi Arabia. aqahtani@kfshrc.edu.sa
Mashael Al-Anazi
Nisha A Viswan
Nisreen Khalaf
Ayman A Abdo
Faisal M Sanai
Hamad Al-Ashgar
Mohammed Al-Ahdal
King Faisal Specialist Hospital & Research Centre · SAKing Saud University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

aimKinesin family member 1B (KIF1B) gene resides in the chromosomal region 1p36.22 and has been reported to have frequent deletions in a variety of human cancers. A recent genome wide association study (GWAS) study conducted on a Chinese population has reported the involvement of a KIF1B genetic variant in Hepatitis B virus (HBV)-related hepatocellular carcinoma (HCC). This study aims to investigate the significance of KIF1B genetic variations in HBV-associated hepatitis in patients of Saudi Arabian ethnicity.

methodsTaqMan genotyping assay was used to investigate the association of three SNPs (rs17401966, rs12734551, and rs3748578) in 584 normal healthy controls and 660 HBV-infected patients. The patients were categorized into inactive carriers (Case I), active carriers (Case II), Cirrhosis (Case III) and Cirrhosis-HCC (Case IV) sub-groups.

resultsSince SNPs rs12734551 and rs3748578 are in strong linkage disequilibrium (LD) with rs17401966, only results for the latter SNP are reported. Therefore, the allele frequency of rs17401966 among HBV-infected patients and healthy controls were comparable and therefore, no significant association was observed (P=0.2811, Odds Ratio (OR) 0.897). A similar analysis was performed among the different sub-groups in order to determine whether KIF1B SNPs were associated with the advancement of the disease. No significant differences were observed in any of the comparisons performed.

conclusionPolymorphisms at KIF1B gene locus investigated in this study showed no significant association with HBV infection or with HBV-associated diseases such as liver cirrhosis or HCC.

Indexed as

Genetic Predisposition to DiseaseCase-Control StudiesGenetic MarkersHaplotypesHepatitis B, ChronicHepatitis B virusHumansKinesinsPolymorphism, Single NucleotideGenetic MarkersKIF1B protein, humanKinesins

Identifiers

PMID23028799
PMCPMC3445584
OpenAlexW2082501602

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.