Evidence map›Paper›PMID 23028701›Full record

ArticlePloS one2012

In-depth investigation of archival and prospectively collected samples reveals no evidence for XMRV infection in prostate cancer.

Deanna Lee, Jaydip Das Gupta, Christina Gaughan, Imke Steffen, Ning Tang, Ka-Cheung Luk, Xiaoxing Qiu, Anatoly Urisman, Nicole Fischer, Ross Molinaro and 9 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 39 citations in OpenAlex.

  1. Biographical Feature: Charles Y. Chiu, M.D., Ph.D.Journal of clinical microbiology · 2024
    Article
  2. Review
  3. Male circumcision and prostate cancer: A geographical analysis, meta-analysis, and cost analysis.Canadian Urological Association journal = Journal de l'Association des urologues du Canada · 2020
    Review
  4. Article
  5. Article
  6. Tumour virology in the era of high-throughput genomics.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  7. Viral Surveillance in Serum Samples From Patients With Acute Liver Failure By Metagenomic Next-Generation Sequencing.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2017
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Next-generation sequencing of tissue: A logical extension.Neurology(R) neuroimmunology & neuroinflammation · 2016
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Concerns over the origin of NIH-CQV, a novel virus discovered in Chinese patients with seronegative hepatitis.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 2 countries.

Deanna LeeDepartment of Laboratory Medicine, University of San Francisco, San Francisco, California, United States of America.
Jaydip Das Gupta
Christina Gaughan
Imke Steffen
Ning Tang
Ka-Cheung Luk
Xiaoxing Qiu
Anatoly Urisman
Nicole Fischer
Ross Molinaro
Miranda Broz
Gerald Schochetman
Eric A Klein
Don Ganem
Joseph L Derisi
Graham Simmons
John Hackett
Robert H Silverman
Charles Y Chiu
Abbott Fund · USCleveland Clinic · USBlood Systems Research Institute · USUniversity of San Francisco · USAbbott (United States) · USEmory University · USHoward Hughes Medical Institute · USNovartis (United States) · USUniversity Medical Center Hamburg-Eppendorf · DEUniversity of California, San Francisco · US

Funding

Pan-Genomic Approaches for Comprehensive Blood Screening of Novel or Emerging Infectious AgentsR01HL105704 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHIU, CHARLES YEN · 2011 to 2020
$5.9M
Role of RNase L in the Biology of Prostate CancerR01CA103943 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI SILVERMAN, ROBERT H. · 2004 to 2008
$1.5M
Optimization of XMRV and other MLV-related virus detection for screening of bloodR21HL109761 · NHLBI · VITALANT · PI SIMMONS, GRAHAM · 2011 to 2012
$427k
Howard Hughes Medical InstituteNCI NIH HHS CA103943NCI NIH HHS R01 CA103943NHLBI NIH HHS 1R21-HL109761NHLBI NIH HHS R01 HL105704NHLBI NIH HHS R01-HL105704NHLBI NIH HHS R21 HL109761NIAID NIH HHS R56-AI08952
6 · The paper itself

Abstract

XMRV, or xenotropic murine leukemia virus (MLV)-related virus, is a novel gammaretrovirus originally identified in studies that analyzed tissue from prostate cancer patients in 2006 and blood from patients with chronic fatigue syndrome (CFS) in 2009. However, a large number of subsequent studies failed to confirm a link between XMRV infection and CFS or prostate cancer. On the contrary, recent evidence indicates that XMRV is a contaminant originating from the recombination of two mouse endogenous retroviruses during passaging of a prostate tumor xenograft (CWR22) in mice, generating laboratory-derived cell lines that are XMRV-infected. To confirm or refute an association between XMRV and prostate cancer, we analyzed prostate cancer tissues and plasma from a prospectively collected cohort of 39 patients as well as archival RNA and prostate tissue from the original 2006 study. Despite comprehensive microarray, PCR, FISH, and serological testing, XMRV was not detected in any of the newly collected samples or in archival tissue, although archival RNA remained XMRV-positive. Notably, archival VP62 prostate tissue, from which the prototype XMRV strain was derived, tested negative for XMRV on re-analysis. Analysis of viral genomic and human mitochondrial sequences revealed that all previously characterized XMRV strains are identical and that the archival RNA had been contaminated by an XMRV-infected laboratory cell line. These findings reveal no association between XMRV and prostate cancer, and underscore the conclusion that XMRV is not a naturally acquired human infection.

Indexed as

AnimalsCell Line, TumorCohort StudiesDatabases, FactualGenome, ViralHumansMaleMiceMitochondriaPolymorphism, Single NucleotideProspective StudiesProstatectomyProstatic NeoplasmsRNASpecimen HandlingXenotropic murine leukemia virus-related virusRNA

Identifiers

PMID23028701
PMCPMC3445615
OpenAlexW1981665475

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.