Evidence map›Paper›PMID 23028530›Full record

ArticlePloS one2012

MRN1 implicates chromatin remodeling complexes and architectural factors in mRNA maturation.

Louis Düring, Michael Thorsen, Darima Sophia Njama Petersen, Brian Køster, Torben Heick Jensen, Steen Holmberg

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. International journal of molecular sciences · 2023
    Article
  2. Post-transcriptional control of fungal cell wall synthesis.Cell surface (Amsterdam, Netherlands) · 2022
    Article
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Louis DüringDepartment of Biology, Copenhagen BioCenter, University of Copenhagen, Copenhagen, Denmark.
Michael Thorsen
Darima Sophia Njama Petersen
Brian Køster
Torben Heick Jensen
Steen Holmberg
University of Copenhagen · DKAarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A functional relationship between chromatin structure and mRNA processing events has been suggested, however, so far only a few involved factors have been characterized. Here we show that rsc nhp6ΔΔ mutants, deficient for the function of the chromatin remodeling factor RSC and the chromatin architectural proteins Nhp6A/Nhp6B, accumulate intron-containing pre-mRNA at the restrictive temperature. In addition, we demonstrate that rsc8-ts16 nhp6ΔΔ cells contain low levels of U6 snRNA and U4/U6 di-snRNA that is further exacerbated after two hours growth at the restrictive temperature. This change in U6 snRNA and U4/U6 di-snRNA levels in rsc8-ts16 nhp6ΔΔ cells is indicative of splicing deficient conditions. We identify MRN1 (multi-copy suppressor of rsc nhp6ΔΔ) as a growth suppressor of rsc nhp6ΔΔ synthetic sickness. Mrn1 is an RNA binding protein that localizes both to the nucleus and cytoplasm. Genetic interactions are observed between 2 µm-MRN1 and the splicing deficient mutants snt309Δ, prp3, prp4, and prp22, and additional genetic analyses link MRN1, SNT309, NHP6A/B, SWI/SNF, and RSC supporting the notion of a role of chromatin structure in mRNA processing.

Indexed as

Chromatin Assembly and DisassemblyDNA-Binding ProteinsHMGN ProteinsImmunoblottingMicroscopy, FluorescenceReverse Transcriptase Polymerase Chain ReactionRNA, MessengerRNA, Small NuclearSaccharomyces cerevisiae ProteinsSpliceosomesTranscription FactorsDNA-Binding ProteinsHMGN ProteinsNHP6A protein, S cerevisiaeNHP6B protein, S cerevisiaeRNA, MessengerRNA, Small NuclearRSC complex, S cerevisiaeSaccharomyces cerevisiae ProteinsSNT309 protein, S cerevisiaeTranscription FactorsU4 small nuclear RNAU6 small nuclear RNA

Identifiers

PMID23028530
PMCPMC3445587
OpenAlexW1974252475

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.