Evidence map›Paper›PMID 23028403›Full record

ArticleEvolutionary applications2012

Genomic regions in crop-wild hybrids of lettuce are affected differently in different environments: implications for crop breeding.

Yorike Hartman, Danny A P Hooftman, Brigitte Uwimana, Clemens C M van de Wiel, Marinus J M Smulders, Richard G F Visser, Peter H van Tienderen

Abstract read
In one paragraph

Article in Evolutionary applications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Mapping and identification of genetic loci affecting earliness of bolting and flowering in lettuce.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  2. Quantitative Trait Loci and Candidate Genes Associated with Photoperiod Sensitivity in Lettuce (Lactuca spp.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yorike HartmanInstitute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands.
Danny A P Hooftman
Brigitte Uwimana
Clemens C M van de Wiel
Marinus J M Smulders
Richard G F Visser
Peter H van Tienderen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many crops contain domestication genes that are generally considered to lower fitness of crop-wild hybrids in the wild environment. Transgenes placed in close linkage with such genes would be less likely to spread into a wild population. Therefore, for environmental risk assessment of GM crops, it is important to know whether genomic regions with such genes exist, and how they affect fitness. We performed quantitative trait loci (QTL) analyses on fitness(-related) traits in two different field environments employing recombinant inbred lines from a cross between cultivated Lactuca sativa and its wild relative Lactuca serriola. We identified a region on linkage group 5 where the crop allele consistently conferred a selective advantage (increasing fitness to 212% and 214%), whereas on linkage group 7, a region conferred a selective disadvantage (reducing fitness to 26% and 5%), mainly through delaying flowering. The probability for a putative transgene spreading would therefore depend strongly on the insertion location. Comparison of these field results with greenhouse data from a previous study using the same lines showed considerable differences in QTL patterns. This indicates that care should be taken when extrapolating experiments from the greenhouse, and that the impact of domestication genes has to be assessed under field conditions.

Indexed as

crop–wild hybridsfitnesshitchhikingLactucamitigation strategyquantitative trait lociselectiontransgenic plants

Identifiers

PMID23028403
PMCPMC3461145

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.