Evidence map›Paper›PMID 23028341›Full record

ArticlePLoS genetics2012

Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.

Xiaobo Yang, Jielin Sun, Yong Gao, Aihua Tan, Haiying Zhang, Yanling Hu, Junjie Feng, Xue Qin, Sha Tao, Zhuo Chen and 19 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  13. Medical Records-Based Genetic Studies of the Complement System.Journal of the American Society of Nephrology : JASN · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 10 institutions in 2 countries.

Xiaobo YangDepartment of Occupational Health and Environmental Health, School of Public Health, Guangxi Medical University, Nanning, Guangxi, China.
Jielin Sun
Yong Gao
Aihua Tan
Haiying Zhang
Yanling Hu
Junjie Feng
Xue Qin
Sha Tao
Zhuo Chen
Seong-Tae Kim
Tao Peng
Ming Liao
Xiaoling Lin
Zengfeng Zhang
Minzhong Tang
Li Li
Linjian Mo
Zhengjia Liang
Deyi Shi
Zhang Huang
Xianghua Huang
Ming Liu
Qian Liu
Shijun Zhang
Jeffrey M Trent
S Lilly Zheng
Jianfeng Xu
Zengnan Mo
Guangxi Medical University · CNWake Forest University · USFudan University · CNNantong University · CNBeijing University of Technology · CNFirst Affiliated Hospital of GuangXi Medical University · CNGuigang City People's Hospital · CNNational Institutes of Health · USVan Andel Institute · USYancheng First People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Complement C3 and C4 play key roles in the main physiological activities of complement system, and their deficiencies or over-expression are associated with many clinical infectious or immunity diseases. A two-stage genome-wide association study (GWAS) was performed for serum levels of C3 and C4. The first stage was conducted in 1,999 healthy Chinese men, and the second stage was performed in an additional 1,496 subjects. We identified two SNPs, rs3753394 in CFH gene and rs3745567 in C3 gene, that are significantly associated with serum C3 levels at a genome-wide significance level (P = 7.33 × 10(-11) and P = 1.83 × 10(-9), respectively). For C4, one large genomic region on chromosome 6p21.3 is significantly associated with serum C4 levels. Two SNPs (rs1052693 and rs11575839) were located in the MHC class I area that include HLA-A, HLA-C, and HLA-B genes. Two SNPs (rs2075799 and rs2857009) were located 5' and 3' of C4 gene. The other four SNPs, rs2071278, rs3763317, rs9276606, and rs241428, were located in the MHC class II region that includes HLA-DRA, HLA-DRB, and HLA-DQB genes. The combined P-values for those eight SNPs ranged from 3.19 × 10(-22) to 5.62 × 10(-97). HBsAg-positive subjects have significantly lower C3 and C4 protein concentrations compared with HBsAg-negative subjects (P<0.05). Our study is the first GWAS report which shows genetic components influence the levels of complement C3 and C4. Our significant findings provide novel insights of their related autoimmune, infectious diseases, and molecular mechanisms.

Indexed as

AdolescentAdultAgedAged, 80 and overComplement C3Complement C4Genes, MHC Class IIGenome-Wide Association StudyHepatitis B Surface AntigensHLA-A AntigensHLA-B AntigensHLA-C AntigensHLA-DQ beta-ChainsHLA-DR alpha-ChainsHumansMaleComplement C3Complement C4Hepatitis B Surface AntigensHLA-A AntigensHLA-B AntigensHLA-C AntigensHLA-DQbeta antigenHLA-DQ beta-ChainsHLA-DR alpha-Chains

Identifiers

PMID23028341
PMCPMC3441730
OpenAlexW1971173407

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.