Evidence map›Paper›PMID 23027962›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Modified SH2 domain to phototrap and identify phosphotyrosine proteins from subcellular sites within cells.

Akiyoshi Uezu, Hirokazu Okada, Hideji Murakoshi, Cosmo D del Vescovo, Ryohei Yasuda, Dario Diviani, Scott H Soderling

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  14. Src promotes GTPase activity of Ras via tyrosine 32 phosphorylation.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  15. Article
  16. The genesis of tyrosine phosphorylation.Cold Spring Harbor perspectives in biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Akiyoshi UezuDepartment of Cell Biology and Howard Hughes Medical Institute and Neurobiology Department, Duke University Medical School, Durham, NC 27710, USA.
Hirokazu Okada
Hideji Murakoshi
Cosmo D del Vescovo
Ryohei Yasuda
Dario Diviani
Scott H Soderling
Howard Hughes Medical Institute · USUniversity of Lausanne · CH

Funding

GAPs in Signaling to the Spine and Retardation: Mechanisms and the Role of WRPR01NS059957 · NINDS · DUKE UNIVERSITY · PI SODERLING, SCOTT H · 2008 to 2017
$3.1M
Mapping the Architecture of Cancer Signaling PathwaysR21CA140030 · NCI · DUKE UNIVERSITY · PI SODERLING, SCOTT H · 2009 to 2010
$375k
Howard Hughes Medical InstituteNCI NIH HHS R21 CA140030NCI NIH HHS R21-CA-140030-01NINDS NIH HHS R01 NS059957NINDS NIH HHS R01-NS059957
6 · The paper itself

Abstract

Spatial regulation of tyrosine phosphorylation is important for many aspects of cell biology. However, phosphotyrosine accounts for less than 1% of all phosphorylated substrates, and it is typically a very transient event in vivo. These factors complicate the identification of key tyrosine kinase substrates, especially in the context of their extraordinary spatial organization. Here, we describe an approach to identify tyrosine kinase substrates based on their subcellular distribution from within cells. This method uses an unnatural amino acid-modified Src homology 2 (SH2) domain that is expressed within cells and can covalently trap phosphotyrosine proteins on exposure to light. This SH2 domain-based photoprobe was targeted to cellular structures, such as the actin cytoskeleton, mitochondria, and cellular membranes, to capture tyrosine kinase substrates unique to each cellular region. We demonstrate that RhoA, one of the proteins associated with actin, can be phosphorylated on two tyrosine residues within the switch regions, suggesting that phosphorylation of these residues might modulate RhoA signaling to the actin cytoskeleton. We conclude that expression of SH2 domains within cellular compartments that are capable of covalent phototrapping can reveal the spatial organization of tyrosine kinase substrates that are likely to be important for the regulation of subcellular structures.

Indexed as

src Homology DomainsCell CompartmentationHEK293 CellsHumansMass SpectrometryPhosphoproteinsPhosphorylationPhosphotyrosineSubcellular FractionsPhosphoproteinsPhosphotyrosine

Identifiers

PMID23027962
PMCPMC3491470
OpenAlexW2157649286

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.