Evidence map›Paper›PMID 23027952›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Chlamydia trachomatis protein GrgA activates transcription by contacting the nonconserved region of σ66.

Xiaofeng Bao, Bryce E Nickels, Huizhou Fan

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 48 citations in OpenAlex.

  1. Coordinated topoisomerase function shapes the fluoroquinolone response ofbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Requirement of GrgA forbioRxiv : the preprint server for biology · 2023
    Article
  7. Molecular pathogenesis ofFrontiers in cellular and infection microbiology · 2023
    Review
  8. Article
  9. Article
  10. The Repressor Function of theJournal of bacteriology · 2020
    Article
  11. Review
  12. Article
  13. Structural basis for transcription activation by Crl through tethering of σProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Role for GrgA in Regulation of σJournal of bacteriology · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Xiaofeng BaoDepartment of Pharmacology, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, Piscataway, NJ 08854, USA.
Bryce E Nickels
Huizhou Fan
Rutgers, The State University of New Jersey · US

Funding

In Vivo Studies of Abortive InitiationR01GM088343 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI NICKELS, BRYCE EDWARD · 2011 to 2015
$1.7M
Peptide Deformylase Inhibitor LBM415 for Sexually Transmitted InfectionsR33AI071954 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI FAN, HUIZHOU · 2009 to 2011
$971k
Peptide Deformylase Inhibitor LBM415 for Sexually Transmitted InfectionsR21AI071954 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI FAN, HUIZHOU · 2007 to 2008
$408k
NIAID NIH HHS AI071954NIAID NIH HHS R21 AI071954NIAID NIH HHS R33 AI071954NIGMS NIH HHS GM088343NIGMS NIH HHS R01 GM088343
6 · The paper itself

Abstract

The bacterial RNA polymerase holoenzyme consists of a catalytic core enzyme in complex with a σ factor that is required for promoter-specific transcription initiation. Primary, or housekeeping, σ factors are responsible for most of the gene expression that occurs during the exponential phase of growth. Primary σ factors share four regions of conserved sequence, regions 1-4, which have been further subdivided. Many primary σ factors also contain a nonconserved region (NCR) located between subregions 1.2 and 2.1, which can vary widely in length. Interactions between the NCR of the primary σ factor of Escherichia coli, σ(70), and the β' subunit of the E. coli core enzyme have been shown to influence gene expression, suggesting that the NCR of primary σ factors represents a potential target for transcription regulation. Here, we report the identification and characterization of a previously undocumented Chlamydia trachomatis transcription factor, designated GrgA (general regulator of genes A). We demonstrate in vitro that GrgA is a DNA-binding protein that can stimulate transcription from a range of σ(66)-dependent promoters. We further show that GrgA activates transcription by contacting the NCR of the primary σ factor of C. trachomatis, σ(66). Our findings suggest GrgA serves as an important regulator of σ(66)-dependent transcription in C. trachomatis. Furthermore, because GrgA is present only in chlamydiae, our findings highlight how nonconserved regions of the bacterial RNA polymerase can be targets of regulatory factors that are unique to particular organisms.

Indexed as

Bacterial ProteinsBlotting, WesternChlamydia trachomatisChromatography, LiquidElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialRecombinant ProteinsSigma FactorTandem Mass SpectrometryTranscriptional ActivationTranscription FactorsBacterial ProteinsRecombinant Proteinssigma 66 factor, ChlamydiaSigma FactorTranscription Factors

Identifiers

PMID23027952
PMCPMC3479454
OpenAlexW1965843462

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.