Evidence map›Paper›PMID 23027664›Full record

ArticlePlant physiology2012

Buffering capacity explains signal variation in symbiotic calcium oscillations.

Emma Granqvist, Derin Wysham, Saul Hazledine, Wojciech Kozlowski, Jongho Sun, Myriam Charpentier, Teresa Vaz Martins, Pauline Haleux, Krasimira Tsaneva-Atanasova, J Allan Downie and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Cellular CaThe Plant cell · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. A role for the mevalonate pathway in early plant symbiotic signaling.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Article
  15. Article
  16. Nuclear calcium signaling in plants.Plant physiology · 2013
    Review
  17. Towards the Physics of Calcium Signalling in Plants.Plants (Basel, Switzerland) · 2013
    Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Emma GranqvistComputational and Systems Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Derin Wysham
Saul Hazledine
Wojciech Kozlowski
Jongho Sun
Myriam Charpentier
Teresa Vaz Martins
Pauline Haleux
Krasimira Tsaneva-Atanasova
J Allan Downie
Giles E D Oldroyd
Richard J Morris
John Innes Centre · GBUniversity of Bristol · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/00000611
6 · The paper itself

Abstract

Legumes form symbioses with rhizobial bacteria and arbuscular mycorrhizal fungi that aid plant nutrition. A critical component in the establishment of these symbioses is nuclear-localized calcium (Ca(2+)) oscillations. Different components on the nuclear envelope have been identified as being required for the generation of the Ca(2+) oscillations. Among these an ion channel, Doesn't Make Infections1, is preferentially localized on the inner nuclear envelope and a Ca(2+) ATPase is localized on both the inner and outer nuclear envelopes. Doesn't Make Infections1 is conserved across plants and has a weak but broad similarity to bacterial potassium channels. A possible role for this cation channel could be hyperpolarization of the nuclear envelope to counterbalance the charge caused by the influx of Ca(2+) into the nucleus. Ca(2+) channels and Ca(2+) pumps are needed for the release and reuptake of Ca(2+) from the internal store, which is hypothesized to be the nuclear envelope lumen and endoplasmic reticulum, but the release mechanism of Ca(2+) remains to be identified and characterized. Here, we develop a mathematical model based on these components to describe the observed symbiotic Ca(2+) oscillations. This model can recapitulate Ca(2+) oscillations, and with the inclusion of Ca(2+)-binding proteins it offers a simple explanation for several previously unexplained phenomena. These include long periods of frequency variation, changes in spike shape, and the initiation and termination of oscillations. The model also predicts that an increase in buffering capacity in the nucleoplasm would cause a period of rapid oscillations. This phenomenon was observed experimentally by adding more of the inducing signal.

Indexed as

Calcium SignalingBuffersCalciumComputer SimulationKineticsMedicago truncatulaModels, BiologicalReproducibility of ResultsSymbiosisBuffersCalcium

Identifiers

PMID23027664
PMCPMC3510149
OpenAlexW2074902453

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.