Evidence map›Paper›PMID 23025533›Full record

SynthesisBritish journal of haematology2012

Common variants within 6p21.31 locus are associated with chronic lymphocytic leukaemia and, potentially, other non-Hodgkin lymphoma subtypes.

Susan L Slager, Nicola J Camp, Lucia Conde, Tait D Shanafelt, Sara J Achenbach, Kari G Rabe, Neil E Kay, Anne J Novak, Timothy G Call, Paige M Bracci and 15 more

Registry-linked trialAbstract readMeta-Analysis
In one paragraph

Synthesis in British journal of haematology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00626496 (Genetic Epidemiology of Lymphoproliferative Disorders), which is not on this map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00626496 recruitingnot on this map

Genetic Epidemiology of Lymphoproliferative Disorders

TypeobservationalSponsorMayo ClinicRan2004 to 2029Enrolled3,000ConditionsLymphoma, Non-Hodgkin, Leukemia, Lymphocytic, Chronic, B-Cell, Lymphoma, B-Cell, Monoclonal B-Cell Lymphocytosis
3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Susan L SlagerMayo Clinic College of Medicine, Rochester, MN, USA. slager@mayo.edu
Nicola J Camp
Lucia Conde
Tait D Shanafelt
Sara J Achenbach
Kari G Rabe
Neil E Kay
Anne J Novak
Timothy G Call
Paige M Bracci
Fenna M C Sille
Sylvia Sanchez
Nicholas K Akers
Julie M Cunningham
Daniel J Serie
Shannon K McDonnell
Jose F Leis
Alice H Wang
J Brice Weinberg
Martha Glenn
Brian Link
Celine M Vachon
Mark C Lanasa
Christine F Skibola
James R Cerhan

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Felicity Enders · 1985 to 2026
$151.3M
Training CoreP42ES004705 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MORELLO-FROSCH, RACHEL ADELE · 1987 to 2025
$74.6M
The Role of Monocytes in non-Hodgkin LymphomaP50CA097274 · NCI · UNIVERSITY OF IOWA · PI WEINER, GEORGE J. · 2002 to 2021
$45.7M
Genetic Epidemiology of Chronic Lymphocytic LeukemiaU01CA118444 · NCI · MAYO CLINIC ROCHESTER · PI SLAGER, SUSAN L · 2006 to 2015
$7.1M
Molecular Epidemiology of NHL and CLLR01CA092153 · NCI · MAYO CLINIC ROCHESTER · PI CERHAN, JAMES R · 2003 to 2012
$6.7M
GENETIC EPIDEMIOLOGY OF CHRONIC LYMPHOCYTIC LEUKEMIAR01CA134674 · NCI · UNIVERSITY OF UTAH · PI CAMP, NICOLA J. · 2010 to 2016
$3.8M
A Genome-Wide Association Study of Non-Hodgkin LymphomaR01CA122663 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SKIBOLA, CHRISTINE F. · 2006 to 2010
$2.7M
Genetic Susceptibility to Non-Hodgkins LymphomaR01CA104682 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SKIBOLA, CHRISTINE F. · 2003 to 2012
$2.6M
Resequencing and Functional Studies to Identify Causal Gene Variants of LymphomaR01CA154643 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZHANG, JIANQING · 2011 to 2014
$2.4M
Pooling and expansion of Chronic Lymphocytic Leukemia GWA dataR01CA148690 · NCI · MAYO CLINIC ROCHESTER · PI SLAGER, SUSAN L · 2010 to 2012
$1.7M
Molecular Pathogenesis of Monoclonal B Cell Lymphocytosis and CLLK08CA134919 · NCI · DUKE UNIVERSITY · PI LANASA, MARK C · 2011 to 2013
$483k
EPIDEMIOLOGY OF NON HODGKINS'S LYMPHOMA DATA ANALYSISR03CA089745 · NCI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI HOLLY, ELIZABETH A. · 2001 to 2002
$148k
NCI NIH HHS CA104682NCI NIH HHS CA118444NCI NIH HHS CA122663NCI NIH HHS CA134674NCI NIH HHS CA134919NCI NIH HHS CA148690NCI NIH HHS CA154643NCI NIH HHS CA89745NCI NIH HHS CA92153NCI NIH HHS CA97274NCI NIH HHS HHSN261201000026CNCI NIH HHS K08 CA134919NCI NIH HHS N01 CA015083NCI NIH HHS P30 CA015083NCI NIH HHS P50 CA097274NCI NIH HHS R01 CA045614NCI NIH HHS R01 CA092153NCI NIH HHS R01 CA104682NCI NIH HHS R01 CA122663NCI NIH HHS R01 CA134674NCI NIH HHS R01 CA148690NCI NIH HHS R01 CA154643NCI NIH HHS R03 CA089745NCI NIH HHS U01 CA118444NIEHS NIH HHS P42 ES004705
6 · The paper itself

Abstract

A recent meta-analysis of three genome-wide association studies of chronic lymphocytic leukaemia (CLL) identified two common variants at the 6p21.31 locus that are associated with CLL risk. To verify and further explore the association of these variants with other non-Hodgkin lymphoma (NHL) subtypes, we genotyped 1196 CLL cases, 1699 NHL cases, and 2410 controls. We found significant associations between the 6p21.31 variants and CLL risk (rs210134: P = 0·01; rs210142: P = 6·8 × 10(-3)). These variants also showed a trend towards association with some of the other NHL subtypes. Our results validate the prior work and support specific genetic pathways for risk among NHL subtypes.

Indexed as

Chromosomes, Human, Pair 6bcl-2 Homologous Antagonist-Killer ProteinCase-Control StudiesDNA, NeoplasmGenetic MarkersGenome-Wide Association StudyGenotypeHumansLeukemia, Lymphocytic, Chronic, B-CellLymphoma, Non-HodgkinPolymorphism, Single NucleotideBAK1 protein, humanbcl-2 Homologous Antagonist-Killer ProteinDNA, NeoplasmGenetic Markers

Identifiers

PMID23025533
PMCPMC3614403

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.