Evidence map›Paper›PMID 23024744›Full record

ArticlePloS one2012

Listeria monocytogenes differential transcriptome analysis reveals temperature-dependent Agr regulation and suggests overlaps with other regulons.

Dominique Garmyn, Yoann Augagneur, Laurent Gal, Anne-Laure Vivant, Pascal Piveteau

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  7. Applied and environmental microbiology · 2022
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  11. Article
  12. Pathogens (Basel, Switzerland) · 2020
    Review
  13. The σRNA biology · 2019
    Article
  14. Article
  15. Article
  16. Chitinase Expression in Listeria monocytogenes Is Influenced byApplied and environmental microbiology · 2017
    Article
  17. Article
  18. Transcriptomic Analysis of the Adaptation ofFrontiers in microbiology · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Dominique GarmynUniversité de Bourgogne, UMR1347, Dijon, France.
Yoann Augagneur
Laurent Gal
Anne-Laure Vivant
Pascal Piveteau
Université de Bourgogne · FRInstitut Agro Dijon · FRInstitut National de la Recherche Agronomique · MA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Listeria monocytogenes is a ubiquitous, opportunistic pathogenic organism. Environmental adaptation requires constant regulation of gene expression. Among transcriptional regulators, AgrA is part of an auto-induction system. Temperature is an environmental cue critical for in vivo adaptation. In order to investigate how temperature may affect AgrA-dependent transcription, we compared the transcriptomes of the parental strain L. monocytogenes EGD-e and its ΔagrA mutant at the saprophytic temperature of 25°C and in vivo temperature of 37°C. Variations of transcriptome were higher at 37°C than at 25°C. Results suggested that AgrA may be involved in the regulation of nitrogen transport, amino acids, purine and pyrimidine biosynthetic pathways and phage-related functions. Deregulations resulted in a growth advantage at 37°C, but affected salt tolerance. Finally, our results suggest overlaps with PrfA, σB, σH and CodY regulons. These overlaps may suggest that through AgrA, Listeria monocytogenes integrates information on its biotic environment.

Indexed as

Gene Expression ProfilingGene Expression Regulation, BacterialTemperatureTranscriptomeAmino AcidsBiofilmsBiological TransportCluster AnalysisGene DeletionGene SilencingListeria monocytogenesPlanktonRegulonSalt ToleranceSigma FactorTranscription FactorsAmino AcidsSigma FactorTranscription Factors

Identifiers

PMID23024744
PMCPMC3443086
OpenAlexW2041150504

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.