Evidence map›Paper›PMID 23024272›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2012

The inducible tissue-specific expression of the human IL-3/GM-CSF locus is controlled by a complex array of developmentally regulated enhancers.

Euan W Baxter, Fabio Mirabella, Sarion R Bowers, Sally R James, Aude-Marine Bonavita, Elisabeth Bertrand, Ruslan Strogantsev, Abbas Hawwari, Andrew G Bert, Andrea Gonzalez de Arce and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Haematologica · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Euan W BaxterLeeds Institute of Molecular Medicine, University of Leeds, St. James's University Hospital, Leeds LS9 7TF, United Kingdom.
Fabio Mirabella
Sarion R Bowers
Sally R James
Aude-Marine Bonavita
Elisabeth Bertrand
Ruslan Strogantsev
Abbas Hawwari
Andrew G Bert
Andrea Gonzalez de Arce
Adam G West
Constanze Bonifer
Peter N Cockerill
University of Leeds · GBSt James's University Hospital · GBSouth Australia Pathology · AUUniversity of Glasgow · GBWestern Infirmary · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E023002/1Medical Research Council G0400180
6 · The paper itself

Abstract

The closely linked human IL-3 and GM-CSF genes are tightly regulated and are expressed in activated T cells and mast cells. In this study, we used transgenic mice to study the developmental regulation of this locus and to identify DNA elements required for its correct activity in vivo. Because these two genes are separated by a CTCF-dependent insulator, and the GM-CSF gene is regulated primarily by its own upstream enhancer, the main objective in this study was to identify regions of the locus required for correct IL-3 gene expression. We initially found that the previously identified proximal upstream IL-3 enhancers were insufficient to account for the in vivo activity of the IL-3 gene. However, an extended analysis of DNase I-hypersensitive sites (DHSs) spanning the entire upstream IL-3 intergenic region revealed the existence of a complex cluster of both constitutive and inducible DHSs spanning the -34- to -40-kb region. The tissue specificity of these DHSs mirrored the activity of the IL-3 gene, and included a highly inducible cyclosporin A-sensitive enhancer at -37 kb that increased IL-3 promoter activity 40-fold. Significantly, inclusion of this region enabled correct in vivo regulation of IL-3 gene expression in T cells, mast cells, and myeloid progenitor cells.

Indexed as

AnimalsCell LineCell Line, TumorCells, CulturedDeoxyribonuclease IEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalGenetic LociGranulocyte-Macrophage Colony-Stimulating FactorHumansInterleukin-3Jurkat CellsMiceMice, TransgenicTissue DistributionDeoxyribonuclease IGranulocyte-Macrophage Colony-Stimulating FactorIL3 protein, humanInterleukin-3

Identifiers

PMID23024272
PMCPMC3480713
OpenAlexW2161822662

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.