Evidence map›Paper›PMID 23021997›Full record

ArticleThe Journal of urology2013

Microcomposition of human urinary calculi using advanced imaging techniques.

Sarah D Blaschko, Joe Miller, Thomas Chi, Lawrence Flechner, Sirine Fakra, Arnold Kahn, Pankaj Kapahi, Marshall L Stoller

Abstract readComparative Study
In one paragraph

Article in The Journal of urology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Pathogenesis of nephrolithiasis.The Journal of urology · 2013
    Article
  7. New insights into the pathogenesis of renal calculi.The Urologic clinics of North America · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Sarah D BlaschkoDepartment of Urology, University of California-San Francisco, San Francisco, California 94143, USA.
Joe Miller
Thomas Chi
Lawrence Flechner
Sirine Fakra
Arnold Kahn
Pankaj Kapahi
Marshall L Stoller
University of California, San Francisco · USBuck Institute for Research on Aging · USLawrence Berkeley National Laboratory · US

Funding

PROTEOMICSP01AG025901 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2007 to 2011
$8.6M
Training in Renal ResearchT32DK007006 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI HOLZMAN, LAWRENCE B. · 1986 to 2023
$8.5M
UCSF KURe Career Development ProgramK12DK083021 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BASKIN, LAURENCE, CARROLL, PETER R · 2008 to 2017
$5.9M
mRNA Translation, TOR and Geroscience (2 of 11)RL1AG032113 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KAPAHI, PANKAJ · 2007 to 2011
$3.2M
Molecular Mechanisms of Lifespan Extension by Dietary Restriction in DrosophilaR01AG038688 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KAPAHI, PANKAJ · 2011 to 2015
$2.3M
Role of mRNA translation in the effects of dietary restriction on lifespanR01AG038012 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KAPAHI, PANKAJ · 2010 to 2013
$1.5M
TOR, mRNA Translation and Dietary Restriction in DrosophilaR01AG031337 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KAPAHI, PANKAJ · 2009 to 2010
$970k
A model of kidney stone disease using D. melanogasterR21DK091727 · NIDDK · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KAPAHI, PANKAJ, STOLLER, MARSHALL · 2012 to 2013
$528k
Regulation of long term feeding and triglyceride storage using DrosophilaR21AG028241 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KAPAHI, PANKAJ · 2005 to 2006
$431k
2013 Aging, Biology of Gordon Research Conference and Gordon Research SeminarR13AG044873 · NIA · GORDON RESEARCH CONFERENCES · PI KAPAHI, PANKAJ · 2013 to 2013
$50k
NIA NIH HHS P01 AG025901NIA NIH HHS P01 AG025901-S1NIA NIH HHS R01 AG031337NIA NIH HHS R01 AG031337-01A1NIA NIH HHS R01 AG038012NIA NIH HHS R01 AG038688NIA NIH HHS R13 AG044873NIA NIH HHS R21 AG028241NIA NIH HHS RL1 AG032113NIDDK NIH HHS K12-DK-07-006NIDDK NIH HHS K12 DK083021NIDDK NIH HHS R21 DK091727
6 · The paper itself

Abstract

purposeCommon methods of commercial urolithiasis analysis, such as light microscopy and Fourier transform infrared spectroscopy, provide limited or no information on the molecular composition of stones, which is vital when studying early stone pathogenesis. We used synchrotron radiation based microfocused x-ray fluorescence, x-ray absorption and x-ray diffraction advanced imaging techniques to identify and map the elemental composition, including trace elements, of urinary calculi on a μm (0.0001 cm) scale. MATERIALS AND

methodsHuman stone samples were obtained during serial percutaneous nephrolithotomy and ureteroscopy procedures. A portion of each sample was sent for commercial stone analysis and a portion was retained for synchrotron radiation based advanced imaging analysis.

resultsSynchrotron radiation based methods of stone analysis correctly identified stone composition and provided additional molecular detail on elemental components and spatial distribution in uroliths. Resolution was on the order of a few μm.

conclusionsKnowledge of all elements present in lithogenesis at this detail allows for better understanding of early stone formation events, which may provide additional insight to prevent and treat stone formation.

Indexed as

Diagnostic ImagingHumansUrinary Calculi

Identifiers

PMID23021997
PMCPMC4124914
OpenAlexW2105085973

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.