Evidence map›Paper›PMID 23019517›Full record

ArticleScientific reports2012

Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph.

Mario López-Pérez, Aitor Gonzaga, Ana-Belen Martin-Cuadrado, Olga Onyshchenko, Akbar Ghavidel, Rohit Ghai, Francisco Rodriguez-Valera

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 151 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Applied and environmental microbiology · 2024
    Article
  11. Genome sequence ofMicrobiology resource announcements · 2024
    Article
  12. Review
  13. Bottom-up and top-down controls onISME communications · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mario López-PérezDivisión de Microbiología, Universidad Miguel Hernández, San Juan 03550, Alicante, Spain.
Aitor Gonzaga
Ana-Belen Martin-Cuadrado
Olga Onyshchenko
Akbar Ghavidel
Rohit Ghai
Francisco Rodriguez-Valera
Universitat de Miguel Hernández d'Elx · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alteromonas macleodii is a marine gammaproteobacterium with widespread distribution in temperate or tropical waters. We describe three genomes of isolates from surface waters around Europe (Atlantic, Mediterranean and Black Sea) and compare them with a previously described deep Mediterranean isolate (AltDE) that belongs to a widely divergent clade. The surface isolates are quite similar, the most divergent being the Black Sea (BS11) isolate. The genomes contain several genomic islands with different gene content. The recruitment of very similar genomic fragments from metagenomes in different locations indicates that the surface clade is globally abundant with little effect of geography, even the AltDE and the BS11 genomes recruiting from surface samples in open ocean locations. The finding of CRISPR protospacers of AltDE in a lysogenic phage in the Atlantic (English Channel) isolate illustrates a flow of genetic material among these clades and a remarkably wide distribution of this phage.

Indexed as

Genome, BacterialWater MicrobiologyAlteromonasAtlantic OceanBlack SeaGenomic IslandsMediterranean SeaMetagenomePhenotypePhylogenyPlasmidsProphagesRNA, TransferSeawaterTranscriptomeRNA, Transfer

Identifiers

PMID23019517
PMCPMC3458243
OpenAlexW2003699638

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.