Evidence map›Paper›PMID 23019344›Full record

ArticleThe Journal of biological chemistry2012

Overcoming transcription activator-like effector (TALE) DNA binding domain sensitivity to cytosine methylation.

Julien Valton, Aurélie Dupuy, Fayza Daboussi, Séverine Thomas, Alan Maréchal, Rachel Macmaster, Kevin Melliand, Alexandre Juillerat, Philippe Duchateau

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed.

  1. Review
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  10. Efficient multitool/multiplex gene engineering with TALE-BE.Frontiers in bioengineering and biotechnology · 2022
    Article
  11. Article
  12. TALENs-an indispensable tool in the era of CRISPR: a mini review.Journal, genetic engineering & biotechnology · 2021
    Review
  13. Review
  14. Article
  15. CRISPR/Cas: a potential gene-editing tool in the nervous system.Cell regeneration (London, England) · 2020
    Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Julien ValtonCellectis S.A., 8 rue de la croix Jarry, 75013 Paris, France. julien.valton@cellectis.com
Aurélie Dupuy
Fayza Daboussi
Séverine Thomas
Alan Maréchal
Rachel Macmaster
Kevin Melliand
Alexandre Juillerat
Philippe Duchateau

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within the past 2 years, transcription activator-like effector (TALE) DNA binding domains have emerged as the new generation of engineerable platform for production of custom DNA binding domains. However, their recently described sensitivity to cytosine methylation represents a major bottleneck for genome engineering applications. Using a combination of biochemical, structural, and cellular approaches, we were able to identify the molecular basis of such sensitivity and propose a simple, drug-free, and universal method to overcome it.

Indexed as

DNA MethylationAnimalsBase SequenceCHO CellsCricetinaeCytosineDNAEpigenesis, GeneticGene SilencingGenetic EngineeringGenetic TherapyHEK293 CellsHomeodomain ProteinsHumansMolecular Sequence DataMutagenesisCytosineDNAHomeodomain ProteinsRecombinant ProteinsRepressor ProteinsTGIF1 protein, human

Identifiers

PMID23019344
PMCPMC3493886

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.