Evidence map›Paper›PMID 23015706›Full record

ArticleJournal of virology2012

Comprehensive analysis of host cellular interactions with human papillomavirus E6 proteins identifies new E6 binding partners and reflects viral diversity.

Elizabeth A White, Rebecca E Kramer, Min Jie Alvin Tan, Sebastian D Hayes, J Wade Harper, Peter M Howley

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 199 citations in OpenAlex.

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  20. Viruses · 2023
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70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Elizabeth A WhiteDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA.
Rebecca E Kramer
Min Jie Alvin Tan
Sebastian D Hayes
J Wade Harper
Peter M Howley
Harvard University · US

Funding

VIRAL ONCOPROTEIN PERTURBATION OF RB/E2F PATHWAYP01CA050661 · NCI · DANA-FARBER CANCER INSTITUTE · PI LIVINGSTON, DAVID MORSE · 1989 to 2013
$35.8M
SYSTEMATIC ANALYSIS OF PROTEOLYSIS PATHWAYS FOR CULLIN TARGETSR01GM070565 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI HARPER, JEFFREY W · 2005 to 2012
$2.6M
Oncogenic Human Papillomavirus Protein NetworkRC1CA145188 · NCI · HARVARD MEDICAL SCHOOL · PI HARPER, JEFFREY W, HOWLEY, PETER M · 2009 to 2010
$998k
Analysis of Cellular Events that Allow Papillomavirus ReplicationF32AI080075 · NIAID · HARVARD MEDICAL SCHOOL · PI WHITE, ELIZABETH A · 2008 to 2010
$149k
NCI NIH HHS P01 CA050661NCI NIH HHS P01 CA50661NCI NIH HHS RC1 CA145188NIAID NIH HHS F32 AI080075NIAID NIH HHS F32AI080075NIGMS NIH HHS GM070565NIGMS NIH HHS R01 GM070565
6 · The paper itself

Abstract

We have begun to define the human papillomavirus (HPV)-associated proteome for a subset of the more than 120 HPV types that have been identified to date. Our approach uses a mass spectrometry-based platform for the systematic identification of interactions between human papillomavirus and host cellular proteins, and here we report a proteomic analysis of the E6 proteins from 16 different HPV types. The viruses included represent high-risk, low-risk, and non-cancer-associated types from genus alpha as well as viruses from four different species in genus beta. The E6 interaction data set consists of 153 cellular proteins, including several previously reported HPV E6 interactors such as p53, E6AP, MAML1, and p300/CBP and proteins containing PDZ domains. We report the genus-specific binding of E6s to either E6AP or MAML1, define the specific HPV E6s that bind to p300, and demonstrate several new features of interactions involving beta HPV E6s. In particular, we report that several beta HPV E6s bind to proteins containing PDZ domains and that at least two beta HPV E6s bind to p53. Finally, we report the newly discovered interaction of proteins of E6 of beta genus, species 2, with the Ccr4-Not complex, the first report of a viral protein binding to this complex. This data set represents a comprehensive survey of E6 binding partners that provides a resource for the HPV field and will allow continued studies on the diverse biology of the human papillomaviruses.

Indexed as

Amino Acid SequenceCell LineHumansMass SpectrometryMolecular Sequence DataOncogene Proteins, ViralOpen Reading FramesPapillomaviridaeProtein BindingSequence Homology, Amino AcidOncogene Proteins, Viral

Identifiers

PMID23015706
PMCPMC3503137
OpenAlexW2053249188

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.