Evidence map›Paper›PMID 23015448›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2012

Bcl-x pre-mRNA splicing regulates brain injury after neonatal hypoxia-ischemia.

Qingli Xiao, Andria L Ford, Jan Xu, Ping Yan, Kuang-Yung Lee, Ernesto Gonzales, Tim West, David M Holtzman, Jin-Moo Lee

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Hypoxia-induced alternative splicing: the 11th Hallmark of Cancer.Journal of experimental & clinical cancer research : CR · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Post-Transcriptional Regulation of Anti-Apoptotic BCL2 Family Members.International journal of molecular sciences · 2018
    Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Qingli XiaoHope Center for Neurological Disorders and Department of Neurology, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
Andria L Ford
Jan Xu
Ping Yan
Kuang-Yung Lee
Ernesto Gonzales
Tim West
David M Holtzman
Jin-Moo Lee
Hope Center for Neurological Disorders · US

Funding

White matter injury as predictor of outcome in neonatal brain injuryP50NS035902 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIERO, DONNA M. · 1997 to 2012
$14.0M
ZINC AND ISCHEMIC BRAIN INJURYP01NS032636 · NINDS · WASHINGTON UNIVERSITY · PI LEE, JIN-MOO · 1995 to 2010
$13.2M
Washington University Center for Translational NeuroscienceP30NS057105 · NINDS · WASHINGTON UNIVERSITY · PI HOLTZMAN, DAVID M. · 2006 to 2011
$8.7M
Mechanisms of Amyloid Angiopathy-Related HemorrhageR01NS048283 · NINDS · WASHINGTON UNIVERSITY · PI LEE, JIN-MOO · 2005 to 2009
$1.5M
Untangling Amyloid Plaques With ProteasesR01NS067905 · NINDS · WASHINGTON UNIVERSITY · PI LEE, JIN-MOO · 2009 to 2010
$850k
NINDS NIH HHS P01 NS032636NINDS NIH HHS P01 NS32636NINDS NIH HHS P01 NS35902NINDS NIH HHS P30 NS057105NINDS NIH HHS P50 NS035902NINDS NIH HHS R01 NS048283NINDS NIH HHS R01 NS067905NINDS NIH HHS R01 NS48283NINDS NIH HHS R01 NS67905
6 · The paper itself

Abstract

The bcl-x gene appears to play a critical role in regulating apoptosis in the developing and mature CNS and following CNS injury. Two isoforms of Bcl-x are produced as a result of alternative pre-mRNA splicing: Bcl-x(L) (the long form) is anti-apoptotic, while Bcl-x(S) (short form) is pro-apoptotic. Despite the antagonistic activities of these two isoforms, little is known about how regulation of alternative splicing of bcl-x may mediate neural cell apoptosis. Here, we report that apoptotic stimuli (staurosporine or C2-ceramide) reciprocally altered Bcl-x splicing in neural cells, decreasing Bcl-x(L) while increasing Bcl-x(S). Specific knockdown of Bcl-x(S) attenuated apoptosis. To further define regulatory elements that influenced Bcl-x splicing, a Bcl-x minigene was constructed. Deletional analysis revealed several consensus sequences within intron 2 that altered splicing. We found that the splicing factor, CUG-binding-protein-1 (CUGBP1), bound to a consensus sequence close to the Bcl-x(L) 5' splice site, altering the Bcl-x(L)/Bcl-x(S) ratio and influencing cell death. In vivo, neonatal hypoxia-ischemia reciprocally altered Bcl-x pre-mRNA splicing, similar to the in vitro studies. Manipulation of the splice isoforms using viral gene transfer of Bcl-x(S) shRNA into the hippocampus of rats before neonatal hypoxia-ischemia decreased vulnerability to injury. Moreover, alterations in nuclear CUGBP1 preceded Bcl-x splicing changes. These results suggest that alternative pre-mRNA splicing may be an important regulatory mechanism for cell death after acute neurological injury and may potentially provide novel targets for intervention.

Indexed as

Alternative SplicingAnalysis of VarianceAnimalsAnimals, NewbornApoptosisbcl-X ProteinBrain InjuriesCELF1 ProteinCells, CulturedCerebral CortexDose-Response Relationship, DrugEmbryo, MammalianEnzyme InhibitorsFemaleFunctional LateralityGene Expression Regulationbcl-X ProteinCELF1 ProteinCelf1 protein, ratenhanced green fluorescent proteinEnzyme InhibitorsGreen Fluorescent ProteinsL-Lactate DehydrogenaseN-acetylsphingosineRNA-Binding ProteinsRNA PrecursorsRNA, Small InterferingSphingosineStaurosporine

Identifiers

PMID23015448
PMCPMC3482490
OpenAlexW1967280538

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.