Evidence map›Paper›PMID 23012477›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Localized cell death focuses mechanical forces during 3D patterning in a biofilm.

Munehiro Asally, Mark Kittisopikul, Pau Rué, Yingjie Du, Zhenxing Hu, Tolga Çağatay, Andra B Robinson, Hongbing Lu, Jordi Garcia-Ojalvo, Gürol M Süel

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 171 papers.

0numbers the graph read from it
0cells of the map it votes in
171citing papers in PubMed
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

171 citing papers in PubMed, 357 citations in OpenAlex.

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  4. Mechanics of compression-driven morphogenesis.Development (Cambridge, England) · 2026
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  10. Single-cell lysis patterns morphogenesis of eDNA in the matrix ofProceedings of the National Academy of Sciences of the United States of America · 2025
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  11. Review
  12. Oxygen microenvironments inMicrobiology (Reading, England) · 2025
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  13. Review
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  17. Article
  18. How bacteria actively use passive physics to make biofilms.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Article
  20. Active interface bulging inProceedings of the National Academy of Sciences of the United States of America · 2024
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111 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Munehiro AsallySection of Molecular Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, CA 92093, USA.
Mark Kittisopikul
Pau Rué
Yingjie Du
Zhenxing Hu
Tolga Çağatay
Andra B Robinson
Hongbing Lu
Jordi Garcia-Ojalvo
Gürol M Süel
The University of Texas at Dallas · USUniversity of California, San Diego · USPompeu Fabra University · ESCenter for Systems Biology · USThe University of Texas Southwestern Medical Center · US

Funding

Biomechanical Measurement and Modeling of Normal and Diseased Middle EarsR01DC011585 · NIDCD · UNIVERSITY OF OKLAHOMA · PI GAN, RONG Z · 2011 to 2015
$1.7M
Regulation of pluripotent differentiation by gene circuit interactions.R01GM088428 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI SUEL, GUROL MEHMET · 2009 to 2013
$1.4M
Development of a BioMIMETIC Composite Scaffold to promote vascular network growthR01EB013212 · NIBIB · STATE UNIVERSITY NEW YORK STONY BROOK · PI RUBENSTEIN, DAVID A · 2011 to 2014
$916k
NIBIB NIH HHS 1 R01 EB013212NIBIB NIH HHS R01 EB013212NIDCD NIH HHS 1 R01 DC011585NIDCD NIH HHS R01 DC011585NIGMS NIH HHS R01 GM088428
6 · The paper itself

Abstract

From microbial biofilm communities to multicellular organisms, 3D macroscopic structures develop through poorly understood interplay between cellular processes and mechanical forces. Investigating wrinkled biofilms of Bacillus subtilis, we discovered a pattern of localized cell death that spatially focuses mechanical forces, and thereby initiates wrinkle formation. Deletion of genes implicated in biofilm development, together with mathematical modeling, revealed that ECM production underlies the localization of cell death. Simultaneously with cell death, we quantitatively measured mechanical stiffness and movement in WT and mutant biofilms. Results suggest that localized cell death provides an outlet for lateral compressive forces, thereby promoting vertical mechanical buckling, which subsequently leads to wrinkle formation. Guided by these findings, we were able to generate artificial wrinkle patterns within biofilms. Formation of 3D structures facilitated by cell death may underlie self-organization in other developmental systems, and could enable engineering of macroscopic structures from cell populations.

Indexed as

Bacillus subtilisBiofilmsGene DeletionGenes, Bacterial

Identifiers

PMID23012477
PMCPMC3503208
OpenAlexW2022288015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.