Evidence map›Paper›PMID 23012419›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Single nucleotide in the MTF-1 binding site can determine metal-specific transcription activation.

Hillel I Sims, Gung-Wei Chirn, Michael T Marr

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. The evolution of insect metallothioneins.Proceedings. Biological sciences · 2020
    Article
  10. Article
  11. The classic metal-sensing transcription factor MTF1 promotes myogenesis in response to copper.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  12. Article
  13. Article
  14. Review
  15. Biogenesis of zinc storage granules inThe Journal of experimental biology · 2018
    Article
  16. Article
  17. Article
  18. A functional polymorphism rs2257440 in the geneInternational journal of clinical and experimental pathology · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hillel I SimsDepartment of Biology, Brandeis University, Waltham, MA 02454, USA.
Gung-Wei Chirn
Michael T Marr
Brandeis University · US

Funding

Mechanism of the Transcriptional Response to Transition MetalsR01GM085250 · NIGMS · BRANDEIS UNIVERSITY · PI MARR, MICHAEL THOMAS · 2009 to 2013
$1.5M
NIGMS NIH HHS R01 GM085250NIGMS NIH HHS R01GM085250
6 · The paper itself

Abstract

Cells respond to changes in environment by shifting their gene expression profile to deal with the new conditions. The cellular response to changes in metal homeostasis is an important example of this. Transition metals such as iron, zinc, and copper are essential micronutrients but other metals such as cadmium are simply toxic. The cell must maintain metal concentrations in a window that supports efficient metabolic function but must also protect against the damaging effects of high concentrations of these metals. One way a cell regulates metal homeostasis is to control genes involved in metal mobilization and storage. Much of this regulation occurs at the level of transcription and the protein most responsible for this is the conserved metal responsive transcription factor 1 (MTF-1). Interestingly, the nature of the changes in the gene expression profile depends on the type of exposure. The cell somehow senses the kind of the metal challenge and responds appropriately. We have been using the Drosophila system to try to understand the mechanism of this metal discrimination. Using genome-wide mapping of MTF-1 binding under different metal stresses we find that, surprisingly, MTF-1 chooses different DNA binding sites depending on the specific nature of the metal insult. We also find that the type of binding site chosen is an important component of the capability to induce the metal-specific transcription activation.

Indexed as

AnimalsBase SequenceBinding SitesBlotting, WesternCadmiumCation Transport ProteinsCell LineCopperCopper Transporter 1DNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsGene ExpressionGene Expression ProfilingImmunoprecipitationMetallothioneinCadmiumCation Transport ProteinsCopperCopper Transporter 1DNA-Binding ProteinsDrosophila ProteinsMetallothioneinMetalsTranscription Factor MTF-1Transcription Factors

Identifiers

PMID23012419
PMCPMC3478646
OpenAlexW2168193421

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.