Evidence map›Paper›PMID 23012364›Full record

ArticleThe Journal of biological chemistry2012

Copper starvation-inducible protein for cytochrome oxidase biogenesis in Bradyrhizobium japonicum.

Fabio Serventi, Zeb Andrew Youard, Valérie Murset, Simona Huwiler, Doris Bühler, Miriam Richter, Ronny Luchsinger, Hans-Martin Fischer, Robert Brogioli, Martina Niederer and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

  1. AccA fromChemical science · 2026
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  9. PCuThe Journal of biological chemistry · 2019
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  14. Methanobactins: from genome to function.Metallomics : integrated biometal science · 2017
    Review
  15. Article
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  19. Article
  20. A bacterial iron exporter for maintenance of iron homeostasis.The Journal of biological chemistry · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Fabio ServentiInstitute of Microbiology, Eidgenössische Technische Hochschule Zürich (ETH Zürich), Wolfgang-Pauli-Strasse 10, CH-8093 Zürich, Switzerland.
Zeb Andrew Youard
Valérie Murset
Simona Huwiler
Doris Bühler
Miriam Richter
Ronny Luchsinger
Hans-Martin Fischer
Robert Brogioli
Martina Niederer
Hauke Hennecke
ETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microarray analysis of Bradyrhizobium japonicum grown under copper limitation uncovered five genes named pcuABCDE, which are co-transcribed and co-regulated as an operon. The predicted gene products are periplasmic proteins (PcuA, PcuC, and PcuD), a TonB-dependent outer membrane receptor (PcuB), and a cytoplasmic membrane-integral protein (PcuE). Homologs of PcuC and PcuE had been discovered in other bacteria, namely PCu(A)C and YcnJ, where they play a role in cytochrome oxidase biogenesis and copper transport, respectively. Deletion of the pcuABCDE operon led to a pleiotropic phenotype, including defects in the aa(3)-type cytochrome oxidase, symbiotic nitrogen fixation, and anoxic nitrate respiration. Complementation analyses revealed that, under our assay conditions, the tested functions depended only on the pcuC gene and not on pcuA, pcuB, pcuD, or pcuE. The B. japonicum genome harbors a second pcuC-like gene (blr7088), which, however, did not functionally replace the mutated pcuC. The PcuC protein was overexpressed in Escherichia coli, purified to homogeneity, and shown to bind Cu(I) with high affinity in a 1:1 stoichiometry. The replacement of His(79), Met(90), His(113), and Met(115) by alanine perturbed copper binding. This corroborates the previously purported role of this protein as a periplasmic copper chaperone for the formation of the Cu(A) center on the aa(3)-type cytochrome oxidase. In addition, we provide evidence that PcuC and the copper chaperone ScoI are important for the symbiotically essential, Cu(A)-free cbb(3)-type cytochrome oxidase specifically in endosymbiotic bacteroids of soybean root nodules, which could explain the symbiosis-defective phenotype of the pcuC and scoI mutants.

Indexed as

Amino Acid SequenceBacterial ProteinsBradyrhizobiumCarrier ProteinsCopperElectron Transport Complex IVGene Expression ProfilingGene Expression Regulation, BacterialGenetic Complementation TestMitochondrial ProteinsMolecular ChaperonesMolecular Sequence DataMutationNitrogenNitrogen FixationOligonucleotide Array Sequence AnalysisBacterial ProteinsCarrier ProteinsCopperElectron Transport Complex IVMitochondrial ProteinsMolecular ChaperonesNitrogen

Identifiers

PMID23012364
PMCPMC3493923
OpenAlexW2014289083

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.