Evidence map›Paper›PMID 23011808›Full record

ArticleMolecular genetics and genomics : MGG2012

A major X-linked locus affects kidney function in mice.

Magalie S Leduc, Holly S Savage, Timothy M Stearns, Clinton L Cario, Kenneth A Walsh, Beverly Paigen, Annerose Berndt

Open access · greenAbstract read
In one paragraph

Article in Molecular genetics and genomics : MGG, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Magalie S LeducTexas Biomedical Research Institute, 7620 NW Loop 410, San Antonio, TX, USA. magalieleduc@gmail.com
Holly S Savage
Timothy M Stearns
Clinton L Cario
Kenneth A Walsh
Beverly Paigen
Annerose Berndt
Jackson Laboratory · USUniversity of Pittsburgh · USTexas Biomedical Research Institute · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
From QTL to Gene for HDL CholesterolR37HL077796 · NHLBI · JACKSON LABORATORY · PI PAIGEN, BEVERLY J · 2009 to 2018
$4.3M
Cloning QTL Genes for Plasma HDL CholesterolR01HL081162 · NHLBI · JACKSON LABORATORY · PI KORSTANJE, RONNY · 2006 to 2013
$3.3M
From QTL to Gene for HDL CholesterolR01HL077796 · NHLBI · JACKSON LABORATORY · PI PAIGEN, BEVERLY J · 2004 to 2008
$2.1M
NCI NIH HHS CA034196NCI NIH HHS P30 CA034196NHLBI NIH HHS HL077796NHLBI NIH HHS HL081162NHLBI NIH HHS R01 HL077796NHLBI NIH HHS R01 HL081162NHLBI NIH HHS R37 HL077796PHS HHS P0083069
6 · The paper itself

Abstract

Chronic kidney disease is a common disease with increasing prevalence in the western population. One common reason for chronic kidney failure is diabetic nephropathy. Diabetic nephropathy and hyperglycemia are characteristics of the mouse inbred strain KK/HlJ, which is predominantly used as a model for metabolic syndrome due to its inherited glucose intolerance and insulin resistance. We used KK/HlJ, an albuminuria-sensitive strain, and C57BL/6J, an albuminuria-resistant strain, to perform a quantitative trait locus (QTL) cross to identify the genetic basis for chronic kidney failure. Albumin-creatinine ratio (ACR) was measured in 130 F2 male offspring. One significant QTL was identified on chromosome (Chr) X and four suggestive QTL were found on Chrs 6, 7, 12, and 13. Narrowing of the QTL region was focused on the X-linked QTL and performed by incorporating genotype and expression analyses for genes located in the region. From the 485 genes identified in the X-linked QTL region, a few candidate genes were identified using a combination of bioinformatic evidence based on genomic comparison of the parental strains and known function in urine homeostasis. Finally, this study demonstrates the significance of the X chromosome in the genetic determination of albuminuria.

Indexed as

Gene Expression RegulationGenes, X-LinkedQuantitative Trait LociAlbuminsAlbuminuriaAnimalsCreatinineFemaleKidneyKidney Failure, ChronicMaleMiceMice, Inbred C57BLMice, Mutant StrainsPolymorphism, Single NucleotideX ChromosomeAlbuminsCreatinine

Identifiers

PMID23011808
PMCPMC3508201
OpenAlexW2084564422

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.