ArticleTheoretical population biology2013
A sequentially Markov conditional sampling distribution for structured populations with migration and recombination.
Article in Theoretical population biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Recent advances in methods to characterize archaic introgression in modern humans.Genome research · 2026Review
- Not Just Ne Ne-More: New Applications for SMC from Ecology to Phylogenies.Genome biology and evolution · 2026Review
- Robust and accurate Bayesian inference of genome-wide genealogies for hundreds of genomes.Nature genetics · 2025Article
- Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination.PLoS computational biology · 2022Article
- Properties of 2-locus genealogies and linkage disequilibrium in temporally structured samples.Genetics · 2022Article
- Variational inference using approximate likelihood under the coalescent with recombination.Genome research · 2021Article
- Article
- Inference of complex population histories using whole-genome sequences from multiple populations.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Fine-Scale Inference of Ancestry Segments Without Prior Knowledge of Admixing Groups.Genetics · 2019Article
- Inference of population history using coalescent HMMs: review and outlook.Current opinion in genetics & development · 2018Review
- Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans.Molecular ecology · 2018Article
- Robust and scalable inference of population history from hundreds of unphased whole genomes.Nature genetics · 2017Article
- Explosive genetic evidence for explosive human population growth.Current opinion in genetics & development · 2016Review
- Article
- Detecting hybridization using ancient DNA.Molecular ecology · 2016Review
- Methods and models for unravelling human evolutionary history.Nature reviews. Genetics · 2015Review
- POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.Science (New York, N.Y.) · 2015Article
- Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum.Proceedings of the National Academy of Sciences of the United States of America · 2015Article
- Efficient inference of population size histories and locus-specific mutation rates from large-sample genomic variation data.Genome research · 2015Article
- Inferring human population size and separation history from multiple genome sequences.Nature genetics · 2014Article
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3 authors.
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Abstract
Conditional sampling distributions (CSDs), sometimes referred to as copying models, underlie numerous practical tools in population genomic analyses. Though an important application that has received much attention is the inference of population structure, the explicit exchange of migrants at specified rates has not hitherto been incorporated into the CSD in a principled framework. Recently, in the case of a single panmictic population, a sequentially Markov CSD has been developed as an accurate, efficient approximation to a principled CSD derived from the diffusion process dual to the coalescent with recombination. In this paper, the sequentially Markov CSD framework is extended to incorporate subdivided population structure, thus providing an efficiently computable CSD that admits a genealogical interpretation related to the structured coalescent with migration and recombination. As a concrete application, it is demonstrated empirically that the CSD developed here can be employed to yield accurate estimation of a wide range of migration rates.
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