Evidence map›Paper›PMID 23009326›Full record

ArticleBiochemistry2012

Correlating conformational shift induction with altered inhibitor potency in a multidrug resistant HIV-1 protease variant.

Ian Mitchelle S de Vera, Mandy E Blackburn, Gail E Fanucci

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Sub-picomolar Inhibition of HIV-1 Protease with a Boronic Acid.Journal of the American Chemical Society · 2018
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Drug Resistance Mutations Alter Dynamics of Inhibitor-Bound HIV-1 Protease.Journal of chemical theory and computation · 2014
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ian Mitchelle S de VeraDepartment of Chemistry, University of Florida, P.O. Box 117200, Gainesville, Florida 32611, USA.
Mandy E Blackburn
Gail E Fanucci

Funding

Upgrade to E500 X- and Q-Band CW EPR Spectrometer for Biomedical ResearchS10RR031603 · NCRR · UNIVERSITY OF FLORIDA · PI FANUCCI, GAIL E · 2011 to 2011
$523k
NCRR NIH HHS S10 RR031603
6 · The paper itself

Abstract

Inhibitor-induced conformational ensemble shifts in a multidrug resistant HIV-1 protease variant, MDR769, are characterized by site-directed spin labeling double electron-electron resonance spectroscopy. For MDR769 compared to the native enzyme, changes in inhibitor IC(50) values are related to a parameter defined as |ΔC|, which is the relative change in the inhibitor-induced shift to the closed state. Specifically, a linear correlation is found between |ΔC| and the magnitude of the change in IC(50), provided that inhibitor binding is not too weak. Moreover, inhibitors that exhibit MDR769 resistance no longer induce a strong shift to a closed conformational ensemble as seen previously in the native enzyme.

Indexed as

Drug Resistance, Multiple, ViralGenetic VariationAmino Acid SubstitutionAnti-HIV AgentsElectron Spin Resonance SpectroscopyGene Expression Regulation, EnzymologicGene Expression Regulation, ViralHIV-1HIV ProteaseModels, MolecularProtein ConformationProtein FoldingSpin LabelsAnti-HIV AgentsHIV ProteaseSpin Labels

Identifiers

PMID23009326
PMCPMC4768727

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.