Evidence map›Paper›PMID 23008753›Full record

ArticleScientific reports2012

Primary role of the chromophore bond length alternation in reversible photoconversion of red fluorescence proteins.

Mikhail Drobizhev, Thomas E Hughes, Yuriy Stepanenko, Pawel Wnuk, Kieran O'Donnell, J Nathan Scott, Patrik R Callis, Alexander Mikhaylov, Leslie Dokken, Aleksander Rebane

Abstract read
In one paragraph

Article in Scientific reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Multiphoton Bleaching of Red Fluorescent Proteins and the Ways to Reduce It.International journal of molecular sciences · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Mikhail DrobizhevDepartment of Physics, Montana State University, Bozeman, MT 59717, USA. drobizhev@physics.montana.edu
Thomas E Hughes
Yuriy Stepanenko
Pawel Wnuk
Kieran O'Donnell
J Nathan Scott
Patrik R Callis
Alexander Mikhaylov
Leslie Dokken
Aleksander Rebane

Funding

Building better probes for 2 photon microscopyR01GM086198 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI DROBIZHEV, MIKHAIL · 2008 to 2011
$966k
NIGMS NIH HHS R01 GM086198
6 · The paper itself

Abstract

Rapid photobleaching of fluorescent proteins can limit their use in imaging applications. The underlying kinetics is multi-exponential and strongly depends on the local chromophore environment. The first, reversible, step may be attributed to a rotation around one of the two exocyclic C-C bonds bridging phenol and imidazolinone groups in the chromophore. However it is not clear how the protein environment controls this motion - either by steric hindrances or by modulating the electronic structure of the chromophore through electrostatic interactions. Here we study the first step of the photobleaching kinetics in 13 red fluorescent proteins (RFPs) with different chromophore environment and show that the associated rate strongly correlates with the bond length alternation (BLA) of the two bridge bonds. The sign of the BLA appears to determine which rotation is activated. Our results present experimental evidence for the dominance of electronic effects in the conformational dynamics of the RFP chromophore.

Indexed as

FluorescencePhotobleachingGreen Fluorescent ProteinsHydrogen-Ion ConcentrationKineticsLasersLuminescent ProteinsModels, TheoreticalPhenolRed Fluorescent ProteinGreen Fluorescent ProteinsLuminescent ProteinsPhenolRed Fluorescent Protein

Identifiers

PMID23008753
PMCPMC3449290

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.