Evidence map›Paper›PMID 23002398›Full record

ArticleCellular and molecular bioengineering2011

Microtubule Tip Tracking and Tip Structures at the Nanometer Scale Using Digital Fluorescence Microscopy.

Alexei O Demchouk, Melissa K Gardner, David J Odde

Open access · greenAbstract read
In one paragraph

Article in Cellular and molecular bioengineering, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  5. Beyond the GTP-cap: Elucidating the molecular mechanisms of microtubule catastrophe.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  6. Tracing and tracking filamentous structures across scales: A systematic review.Computational and structural biotechnology journal · 2023
    Review
  7. Article
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  15. Article
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  18. Review
  19. Article
  20. Measuring microtubule dynamics.Essays in biochemistry · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Alexei O DemchoukDepartment of Biomedical Engineering, University of Minnesota, 7-132 Hasselmo Hall, 312 Church Street SE, Minneapolis, MN 55455, USA.
Melissa K Gardner
David J Odde
University of Minnesota · USUniversity of Minnesota System · US

Funding

Modeling Microtubule Dynamics in MitosisR01GM071522 · NIGMS · UNIVERSITY OF MINNESOTA · PI ODDE, DAVID J. · 2006 to 2013
$2.7M
Microtubule Mechanics at the NanoscaleR01GM076177 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ODDE, DAVID J., SEPT, DAVID · 2007 to 2015
$2.5M
NIGMS NIH HHS R01 GM071522NIGMS NIH HHS R01 GM076177
6 · The paper itself

Abstract

Microtubules (MTs) are central to fundamental cellular processes including mitosis, polarization, and axon extension. A key issue is to understand how MT-associated proteins and therapeutic drugs, such as the anticancer drug paclitaxel, control MT self-assembly. To facilitate this research, it would be helpful to have automated methods that track the tip of dynamically assembling MTs as observed via fluorescence microscopy. Through a combination of digital fluorescence imaging with MT modeling, model-convolution, and automated image analysis of live and fixed MTs, we developed a method for MT tip tracking that includes estimation of the measurement error. We found that the typical single-frame tip tracking accuracy of GFP-tubulin labeled MTs in living LLC-PK1α cells imaged with a standard widefield epifluorescence digital microscope system is ~36 nm, the equivalent of ~4.5 tubulin dimer layers. However, if the MT tips are blunt, the tip tracking accuracy can be as accurate as ~15 nm (~2 dimer layers). By fitting a Gaussian survival function to the MT tip intensity profiles, we also established that MTs within living cells are not all blunt, but instead exhibit highly variable tapered tip structures with a protofilament length standard deviation of ~180 nm. More generally, the tip tracking method can be extended to track the tips of any individual fluorescently labeled filament, and can estimate filament tip structures both in vivo and in vitro with single-frame accuracy on the nanoscale.

Identifiers

PMID23002398
PMCPMC3445660
OpenAlexW2132662279

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.