Evidence map›Paper›PMID 23002145›Full record

ArticleNucleic acids research2012

Removal of a frameshift between the hsdM and hsdS genes of the EcoKI Type IA DNA restriction and modification system produces a new type of system and links the different families of Type I systems.

Gareth A Roberts, Kai Chen, Laurie P Cooper, John H White, Garry W Blakely, David T F Dryden

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Characterization of theFrontiers in microbiology · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gareth A RobertsEastChem School of Chemistry, The University of Edinburgh, The King's Buildings, Edinburgh, EH9 3JJ, UK.
Kai Chen
Laurie P Cooper
John H White
Garry W Blakely
David T F Dryden

Funding

Wellcome Trust 090288/Z/09/ZAWellcome Trust GR080463MA
6 · The paper itself

Abstract

The EcoKI DNA methyltransferase is a trimeric protein comprised of two modification subunits (M) and one sequence specificity subunit (S). This enzyme forms the core of the EcoKI restriction/modification (RM) enzyme. The 3' end of the gene encoding the M subunit overlaps by 1 nt the start of the gene for the S subunit. Translation from the two different open reading frames is translationally coupled. Mutagenesis to remove the frameshift and fuse the two subunits together produces a functional RM enzyme in vivo with the same properties as the natural EcoKI system. The fusion protein can be purified and forms an active restriction enzyme upon addition of restriction subunits and of additional M subunit. The Type I RM systems are grouped into families, IA to IE, defined by complementation, hybridization and sequence similarity. The fusion protein forms an evolutionary intermediate form lying between the Type IA family of RM enzymes and the Type IB family of RM enzymes which have the frameshift located at a different part of the gene sequence.

Indexed as

Artificial Gene FusionBacterial ProteinsColiphagesDeoxyribonucleases, Type I Site-SpecificDNA CleavageDNA Restriction EnzymesDNA Restriction-Modification EnzymesEscherichia coliEscherichia coli ProteinsFrameshifting, RibosomalMutagenesisProtein SubunitsRecombinant Fusion ProteinsSite-Specific DNA-Methyltransferase (Adenine-Specific)Transformation, BacterialBacterial ProteinsDeoxyribonucleases, Type I Site-SpecificDNA modification methylase EcoKIDNA Restriction EnzymesDNA Restriction-Modification Enzymesendodeoxyribonuclease EcoKIEscherichia coli ProteinsHsdM protein, BacteriaHsdR protein, E colihsdS protein, E coliProtein SubunitsRecombinant Fusion ProteinsSite-Specific DNA-Methyltransferase (Adenine-Specific)

Identifiers

PMID23002145
PMCPMC3510504

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.