Evidence map›Paper›PMID 23002115›Full record

ArticleBlood2012

The VPS33B-binding protein VPS16B is required in megakaryocyte and platelet α-granule biogenesis.

Denisa Urban, Ling Li, Hilary Christensen, Fred G Pluthero, Shao Zun Chen, Michael Puhacz, Parvesh M Garg, Kiran K Lanka, James J Cummings, Helmut Kramer and 3 more

Abstract read
In one paragraph

Article in Blood, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 84 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. The winding road to platelet α-granules.Frontiers in cell and developmental biology · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Article
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  12. Article
  13. Article
  14. Review
  15. Unlocking the Molecular Secrete(s) of α-Granule Biogenesis.Arteriosclerosis, thrombosis, and vascular biology · 2018
    Article
  16. Review
  17. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Denisa UrbanDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada.
Ling Li
Hilary Christensen
Fred G Pluthero
Shao Zun Chen
Michael Puhacz
Parvesh M Garg
Kiran K Lanka
James J Cummings
Helmut Kramer
James D Wasmuth
John Parkinson
Walter H A Kahr
Hospital for Sick Children · CAEast Carolina University · USUniversity of Toronto · CASickKids Foundation · CAThe University of Texas Southwestern Medical Center · US

Funding

MOLECULAR ANALYSIS OF THE BOSS TRANSMEMBRANE LIGANDR01EY010199 · NEI · UT SOUTHWESTERN MEDICAL CENTER · PI Helmut J Kramer · 1994 to 2026
$9.7M
CIHR MOP 81208CIHR MOP 84556NEI NIH HHS EY10199NEI NIH HHS R01 EY010199
6 · The paper itself

Abstract

Patients with platelet α or dense δ-granule defects have bleeding problems. Although several proteins are known to be required for δ-granule development, less is known about α-granule biogenesis. Our previous work showed that the BEACH protein NBEAL2 and the Sec1/Munc18 protein VPS33B are required for α-granule biogenesis. Using a yeast two-hybrid screen, mass spectrometry, coimmunoprecipitation, and bioinformatics studies, we identified VPS16B as a VPS33B-binding protein. Immunoblotting confirmed VPS16B expression in various human tissues and cells including megakaryocytes and platelets, and also in megakaryocytic Dami cells. Characterization of platelets from a patient with arthrogryposis, renal dysfunction, and cholestasis (ARC) syndrome containing mutations in C14orf133 encoding VPS16B revealed pale-appearing platelets in blood films and electron microscopy revealed a complete absence of α-granules, whereas δ-granules were observed. Soluble and membrane-bound α-granule proteins were reduced or undetectable, suggesting that both releasable and membrane-bound α-granule constituents were absent. Immunofluorescence microscopy of Dami cells stably expressing GFP-VPS16B revealed that similar to VPS33B, GFP-VPS16B colocalized with markers of the trans-Golgi network, late endosomes and α-granules. We conclude that VPS16B, similar to its binding partner VPS33B, is essential for megakaryocyte and platelet α-granule biogenesis.

Indexed as

ArthrogryposisBlood PlateletsCarrier ProteinsCell LineCholestasisChromosomes, Human, Pair 14Codon, NonsenseFemaleGolgi ApparatusHEK293 CellsHumansInfant, NewbornMegakaryocytesOpen Reading FramesPhylogenyProtein BindingCarrier ProteinsCodon, NonsenseVesicular Transport ProteinsVIPAS39 protein, humanVPS33B protein, human

Identifiers

PMID23002115
PMCPMC3538988
OpenAlexW2078736354

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.